Gene Pput_0028 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_0028 
Symbol 
ID5195145 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp30096 
End bp31118 
Gene Length1023 bp 
Protein Length340 aa 
Translation table11 
GC content59% 
IMG OID640584470 
ProductYVTN beta-propeller repeat-containing protein 
Protein accessionYP_001265388 
Protein GI148545286 
COG category[S] Function unknown 
COG ID[COG3391] Uncharacterized conserved protein 
TIGRFAM ID[TIGR02276] 40-residue YVTN family beta-propeller repeat 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.828005 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000046618 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGATGACTG CCAAGCGGTT TAGTTCTATG GCCTTGGGGA TATCCCTGCT CATCCCTCTG 
GGGCTGGTCA TGGCAAACCC TACGGGTAAC GTCTACACGG CCAATGAACG GTCCGCTTCC
ATTAGCCAGG TAAATCTTGC GACAGGTGAT GTGAGCACGG TCGCCTTGCC GATCGCACCC
CACAACCTAC AGGTTTCGCC CGACGGCAGC TTGCTTCTGG TTGTTGGAGT GGCTGGACAT
GCGGGGCATT CGAGCGGTGA AAAGCCCGGT GGGCAGTTGC TGGTGTTCAG TACCAGCGCG
CTGGACAGGC CACCGTTCAG CTTCCCGGCA GGCGATCACC CGGCTCATGT GGTCACCGAC
GTCACCGGGC TGCGAGCTTT TGTGACCGAT TCCGCTGCCA ACCAGGTGCG AGTATTTGAC
CTTGAGCAGC GAATCGAGTT GCCCGGTATT CCAACTGGGC GTTATCCCCA TGGGCTGCGC
TTGAGCCCTG ATGGCCGGAC ACTCTATATC GCGAACATGA AGAGCGACAG CGTATCGCTT
ATCGATGTCG TCACACTCAA AGAAACCGCG CAGATTCCCG TGGGCAAAGG CCCTGTCCAG
GTCGGCTTTG CCCCTGACGG TCGCCTGGCA TTCGTCTCGC TCAGTGCGAC AAATCAGCTT
GGCATCATCG ACACGGCCAG ACGCAAGGTG ATCAGCAAGG TTGATGTCGG CCGCACGCCA
ATCCAGATGA TGGCCACCGT TGACGGTCGC CAGGTCTATG TCGCGAATCA GGGCAGTGGC
CAGAATCCGG ACGACCGAGT CTCCATCGTA GATCTCCAGA CGCGTAGCAG CCTGGGCACC
GTGACCACCG GCAAGGGTGC CCATGGTGTG GCCATCAGCA GCGACGGCGC TTATGTGTTT
GTCAGCAATA TTGAAGCGGG CACCGTATCT GTCATCGATA CGAGCAGCCG AAAGGTCGTT
GCTACCCATA AGGTTGGCGC CGGGCCAAAC GGGATCAGCT TCGAGCCGCC GAGTGCCCAA
TAA
 
Protein sequence
MMTAKRFSSM ALGISLLIPL GLVMANPTGN VYTANERSAS ISQVNLATGD VSTVALPIAP 
HNLQVSPDGS LLLVVGVAGH AGHSSGEKPG GQLLVFSTSA LDRPPFSFPA GDHPAHVVTD
VTGLRAFVTD SAANQVRVFD LEQRIELPGI PTGRYPHGLR LSPDGRTLYI ANMKSDSVSL
IDVVTLKETA QIPVGKGPVQ VGFAPDGRLA FVSLSATNQL GIIDTARRKV ISKVDVGRTP
IQMMATVDGR QVYVANQGSG QNPDDRVSIV DLQTRSSLGT VTTGKGAHGV AISSDGAYVF
VSNIEAGTVS VIDTSSRKVV ATHKVGAGPN GISFEPPSAQ