Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_0028 |
Symbol | |
ID | 5195145 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 30096 |
End bp | 31118 |
Gene Length | 1023 bp |
Protein Length | 340 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640584470 |
Product | YVTN beta-propeller repeat-containing protein |
Protein accession | YP_001265388 |
Protein GI | 148545286 |
COG category | [S] Function unknown |
COG ID | [COG3391] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR02276] 40-residue YVTN family beta-propeller repeat |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.828005 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.000046618 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGATGACTG CCAAGCGGTT TAGTTCTATG GCCTTGGGGA TATCCCTGCT CATCCCTCTG GGGCTGGTCA TGGCAAACCC TACGGGTAAC GTCTACACGG CCAATGAACG GTCCGCTTCC ATTAGCCAGG TAAATCTTGC GACAGGTGAT GTGAGCACGG TCGCCTTGCC GATCGCACCC CACAACCTAC AGGTTTCGCC CGACGGCAGC TTGCTTCTGG TTGTTGGAGT GGCTGGACAT GCGGGGCATT CGAGCGGTGA AAAGCCCGGT GGGCAGTTGC TGGTGTTCAG TACCAGCGCG CTGGACAGGC CACCGTTCAG CTTCCCGGCA GGCGATCACC CGGCTCATGT GGTCACCGAC GTCACCGGGC TGCGAGCTTT TGTGACCGAT TCCGCTGCCA ACCAGGTGCG AGTATTTGAC CTTGAGCAGC GAATCGAGTT GCCCGGTATT CCAACTGGGC GTTATCCCCA TGGGCTGCGC TTGAGCCCTG ATGGCCGGAC ACTCTATATC GCGAACATGA AGAGCGACAG CGTATCGCTT ATCGATGTCG TCACACTCAA AGAAACCGCG CAGATTCCCG TGGGCAAAGG CCCTGTCCAG GTCGGCTTTG CCCCTGACGG TCGCCTGGCA TTCGTCTCGC TCAGTGCGAC AAATCAGCTT GGCATCATCG ACACGGCCAG ACGCAAGGTG ATCAGCAAGG TTGATGTCGG CCGCACGCCA ATCCAGATGA TGGCCACCGT TGACGGTCGC CAGGTCTATG TCGCGAATCA GGGCAGTGGC CAGAATCCGG ACGACCGAGT CTCCATCGTA GATCTCCAGA CGCGTAGCAG CCTGGGCACC GTGACCACCG GCAAGGGTGC CCATGGTGTG GCCATCAGCA GCGACGGCGC TTATGTGTTT GTCAGCAATA TTGAAGCGGG CACCGTATCT GTCATCGATA CGAGCAGCCG AAAGGTCGTT GCTACCCATA AGGTTGGCGC CGGGCCAAAC GGGATCAGCT TCGAGCCGCC GAGTGCCCAA TAA
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Protein sequence | MMTAKRFSSM ALGISLLIPL GLVMANPTGN VYTANERSAS ISQVNLATGD VSTVALPIAP HNLQVSPDGS LLLVVGVAGH AGHSSGEKPG GQLLVFSTSA LDRPPFSFPA GDHPAHVVTD VTGLRAFVTD SAANQVRVFD LEQRIELPGI PTGRYPHGLR LSPDGRTLYI ANMKSDSVSL IDVVTLKETA QIPVGKGPVQ VGFAPDGRLA FVSLSATNQL GIIDTARRKV ISKVDVGRTP IQMMATVDGR QVYVANQGSG QNPDDRVSIV DLQTRSSLGT VTTGKGAHGV AISSDGAYVF VSNIEAGTVS VIDTSSRKVV ATHKVGAGPN GISFEPPSAQ
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