| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0021 |
|---|
| Symbol | |
|---|
| ID | 5191809 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 23165 |
|---|
| End bp | 24631 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640584464 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001265382 |
|---|
| Protein GI | 148545280 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
|---|
| COG ID | [COG0845] Membrane-fusion protein
[COG5569] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.561063 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00444957 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAATT CAACTATCAG CCTTGTGGTA TTGGCCGCGT TGGCTATCGG CGGTGGCGTT
GGCTATCAGC TAGCAAAGCG TGGGCAGGTG TCCACTGCCT CCCCTGAAAC GCTACAGAAG
GTGCTGTATT GGTATGACCC GATGTACCCC CAGCAGCACT TTCCAGCACC GGGCAAGTCG
CCCTTCATGG ACATGCCACT GGTGCCGAAG TACCAGGAAA GCACCGCTGC TGAGGTGAGC
CCCGCAGTTC AAGTTTCACA GGGGCTCCAA CAAAACCTGG GGGTCCGTCT GGCTACCGTA
GCGAAAGGGC AGCTTGCTCG AACCCTCCAG GTGAGCGGCG TGCTTACCTT CGATGAGCGG
GATTTTAGCG TTCTGCAGGC TCGTACCGGT GGCTACGTCG AACGCACCTA TGGCCGCGCT
ACAGGCGACG TGGTTGCCAA GGGCGCCCCA TTGGCAGATG TGTTGACGCC TGAATGGGCG
GGCTTGCAGG AAGAGTACCT GGCGCTTCAG CGATCTGGGG ACAATGAATT GCGCGCTGCA
GCTCGGCAAC GACTACTGCT GGCGGGTATG CCTGCCGATC TTATCAACCG GATTGACCGT
ACGGGAAGGG TCCAGAATTC GGTAACGCTC TTGGCCCCAA CAGCAGGCGT CCTTCAGGCT
CTGGAATTGC GGCCAGGCAT GACAATGACA CCGGGTGCAA CGTTGGCGAA GATCAATGGT
ATCGCGAACG TCTGGCTTGA GGCCGCAGTA CCTGAAGCGC AAGCCCAAGG CCTACAGGAA
GGACAGGCAG TGCAGGCGAA TCTGGCAGCG TTCCCAGGCG AACCTGTTCC CGGCAAGCTG
ACCGCATTGC TGGCTGATGC GGATCTGCAA AGCCGCACCT TGCGGCTTCG TATAGAACTG
CCCAACCCCG GCGGCCGGTT GCGCCCAGGC ATGACCGCGC AGGTTTCCCT CCATCCGTCC
GGGCAACAGG ATGACAGCCT ACTGGTGCCA GCCGAGGCGA TCATTCGGAC GGGGAAACGC
GATCTCGTAA TGGTGTCAGA AGACGGAGGT CGATTCCGGC CGGTGGAAGT AGTGCTCGGC
CAGGAAAGTG CTGGCCAGGT GGTCGTGCTG CGAGGCCTTC AGGCGGGCCA GCGCGTTGTG
GCGTCCGGGC AGTTTCTGCT GGACTCCGAA GCGAGCTTGA AAGGTATCGA GGCCGTTACT
GCTGGCGATG CTCCACTTGC GCAACCTGTA CAGCCGGCTC TACATCAGGC CAATGGGCGC
ATCGTTCAAA TAGAAGGTAA TCAGCTGACC ATCGCTCATG GACCGTTCGT GACGCTGGGC
ATGCCTGGTA TGACGATGAC TTTCCCTGTG GCAGATCCCC GCTTGATTGC CGGACTCAAG
GTTGGCGAAC GCATCCGGTT TGGAGTGCGC GAGCGCGATG AAGGCATGGT CATCGAGCAA
ATAACCCAGC AGGAGAACCA GCCATGA
|
|---|
| Protein sequence | MRNSTISLVV LAALAIGGGV GYQLAKRGQV STASPETLQK VLYWYDPMYP QQHFPAPGKS
PFMDMPLVPK YQESTAAEVS PAVQVSQGLQ QNLGVRLATV AKGQLARTLQ VSGVLTFDER
DFSVLQARTG GYVERTYGRA TGDVVAKGAP LADVLTPEWA GLQEEYLALQ RSGDNELRAA
ARQRLLLAGM PADLINRIDR TGRVQNSVTL LAPTAGVLQA LELRPGMTMT PGATLAKING
IANVWLEAAV PEAQAQGLQE GQAVQANLAA FPGEPVPGKL TALLADADLQ SRTLRLRIEL
PNPGGRLRPG MTAQVSLHPS GQQDDSLLVP AEAIIRTGKR DLVMVSEDGG RFRPVEVVLG
QESAGQVVVL RGLQAGQRVV ASGQFLLDSE ASLKGIEAVT AGDAPLAQPV QPALHQANGR
IVQIEGNQLT IAHGPFVTLG MPGMTMTFPV ADPRLIAGLK VGERIRFGVR ERDEGMVIEQ
ITQQENQP
|
|---|
| |