| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0020 |
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| Symbol | |
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| ID | 5193367 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 21915 |
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| End bp | 23168 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640584463 |
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| Product | outer membrane efflux protein |
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| Protein accession | YP_001265381 |
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| Protein GI | 148545279 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0171536 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCCCC CACGTTACCG ATTAGGGATG GCATGTCTGG CCGCTCTGAT CAGCCTGTTG
TCGACGTTAC CGGCTCAGGC TACACCGTTG TCTCTGGAGG AAGCGCTTCA ACTTGCCGAA
CGCAATGCCC CCATCCTCCA GGCCAGGCAA GAGCAAATGA CGGCCGCTCG ACACGCTGTG
ATCCCAGCAG GCGAGCTGCC TGATCCACGT CTCAACCTAG GAGTGCAGAA CCTTCCTGTT
GACGGCAGTG ATCGTTGGAG CATGAACCGC GATTTCATGA CGATGCAGGT TGTCGGCCTC
TCCCAGGAAG TACCAAACCG GGACAAGCGG GAGGCACGAG TTGAGACGGC ACGAGCGAGC
GTTGAGCGAG CCGATGCAGA GGCGGTGTTC GAGCGCTTAA AAGTGCGTGC TGCCACAGCC
CAAGCTTGGG TCGCGGCGTA CACCGTTCAA CGGAAACTGC AGCAGTTTGA GGACTTCTAC
AAAGAAAACC GTCTGTTGGC CGCAGCAATC CGCGCACGCC TGGCCGGCGG TACCGGCGCG
ACGGCCGACG CACTTGCTCC TGACCAGGAA GCTGCGCAAC TCGATGAGCA AAAAGATGTT
CTGCTCACAC AGGCCGCTCA GGCACGGGCT GCACTCAAGC GATGGATTGG AGAGGATGCT
GATCCGCAAG CTCAAGCATT TCCGCGCTGG CCAGTGAGCG CGCCGGACTA TCTACACGCT
ATACATGCAC ATCCAGAATT GGCGACCTAC AACGCCCTTA CGCGGGAAGC ACAAGCTCAA
GTGCACCAAG CCTTGGCAGA AAAGAAGTCG GACTGGGGGT GGCAGGTGGA TTACCAGCGG
CGCGGGCCTG AATTCAGCAA TATGGTGAGC CTGCAGGTAA GTTTCCAACT GCCCTTGTTC
GCTGGCTCAC GGCAGGACCC GATGATCGCG GCACGTCGCG CACAAGTCCG GCAACTGGAG
GACGAACAGG AAGCGGCATT GCGTGAGCAT AAAGCGCAGC TGGAGACAGA TCTTGCGGAT
TACCAGCGAT TGCAGCGAGC AGTGCAGCGC AGCCGTGAAA CATTGTTACC GCTAGCGGAG
GATCGAGTCC GCCTCGCCCT TGCTGACTAT CGAGCCGGTA AATCACCCTT AAGTGAGGTT
CTCACCGCTC GACGTCAGCG GGTTGAAACA CGACTGCAAG ACATCGATCT GCAAGGACAG
TTGGCCGCGA CAGCTGCACG GCTGCACTTC GCGTATGGAG AGGTGCGCGC ATGA
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| Protein sequence | MTPPRYRLGM ACLAALISLL STLPAQATPL SLEEALQLAE RNAPILQARQ EQMTAARHAV
IPAGELPDPR LNLGVQNLPV DGSDRWSMNR DFMTMQVVGL SQEVPNRDKR EARVETARAS
VERADAEAVF ERLKVRAATA QAWVAAYTVQ RKLQQFEDFY KENRLLAAAI RARLAGGTGA
TADALAPDQE AAQLDEQKDV LLTQAAQARA ALKRWIGEDA DPQAQAFPRW PVSAPDYLHA
IHAHPELATY NALTREAQAQ VHQALAEKKS DWGWQVDYQR RGPEFSNMVS LQVSFQLPLF
AGSRQDPMIA ARRAQVRQLE DEQEAALREH KAQLETDLAD YQRLQRAVQR SRETLLPLAE
DRVRLALADY RAGKSPLSEV LTARRQRVET RLQDIDLQGQ LAATAARLHF AYGEVRA
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