Gene Pput_0018 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_0018 
Symbol 
ID5192318 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp20038 
End bp21444 
Gene Length1407 bp 
Protein Length468 aa 
Translation table11 
GC content56% 
IMG OID640584461 
Productheavy metal sensor signal transduction histidine kinase 
Protein accessionYP_001265379 
Protein GI148545277 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID[TIGR01386] heavy metal sensor kinase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.0336909 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCGCCC AATCGTCGCT CGTTAAACGC CTTACCCTCA TGTTCATGTT CGCGGTCATC 
GCCGTATTGG TCGTTGCCGG CGTGAGCTTC TACATGCTCA GTCAGCACCA TTTCCAGATG
CTGGATGAGC AAGCCCTGGC CGAGAAACTC GAATCCACCC GGCACATCCT TTCACTTTCA
GCAGCACGTG ATGAACTTGA GGATCAGGAG CCTCAACTGC GTGCTTTGTT GGGGGCTCAT
CAGGACCTTT CTGCGGAGAT TCTTGATGCT GACGGTACTG TCCTGTTCTC GGACTCCAAG
GCATCCCGCA TCCCTGAGCG CTTTAAGCAG GCCTCTTCTG GCGCCGTTTG GGACTGGCAA
ATCGACTCGC GGAACTTCCG GGGGATTACC TCTCAACTGG CTATAGCGCA GGCGCAGGCG
CCGGTAACAG TCATGTTGAT GCTGGATGTC ACCAGCCATG CCCACTTTTT CAAGACGCTG
CAATGGTGGT TCGGCATTGG CTTGGTCATC AGCGCTCTGG TTAGTGCAGG ATTGGGGTGG
ATCGTGGCCA AGAGCGGTCT TCGGCCGGTT GGGCAGATCA CCAAGGTGGC GACATCCATG
TCTGCCCGGT CCCTTCGCGA GCGAATTCCA TTGGAGCCCG TGCCGCTTGA ATTGCAGGAG
CTGATCCTCT CCTTCAACGG AATGCTTGCA CGCCTGGAAG ACGCGTTCGT CCGGCTATCA
AACTTCTCAG CCGACATCGC ACATGAGCTG CGGACTCCGG TAAGTAATCT TCTGACGCAT
ACCGAAGTCG TTCTGACCAA AAAACGCGAC CTCGATGCCT ACGAAGACAA CCTCTACTCC
AATCTTGAAG ACCTCAAGCG CATGTCGCGC ATGATCGATG ACATGCTGTT CCTGGCAAAA
GCTGATAACG GCTTGATCAT CCCCGAGCAG GTTGATATCG ATCTGGTCGG GCTAGTGTCC
AGACTGATTG AGTACTACCA GCTTGCAGCC GAAGACCGAA GCATTCGGCT TGCCCTTCAA
GGCGAAGGTA CGATCCGTGG TGACCGGCTA ATGATTGACC GGGCGGTTTC CAACATTCTA
TCCAACGCTT TGCGCTATAC CCCCGAAGGC CACGATATCG CCGTCCGGAT TGTCGAGGCG
GCTGATCAAG TGAACCTGTC CGTCCAGAAC AATGGGGCCA CGATTGATCC GGAACATATC
AACAAAATCT TCGACCGGTT CTATCGCGCT GACCCTGCAA GGCGGGAAGG AAGCCCAAGC
AACGCCGGCT TGGGTCTGGC CATAACGCGT TCGATCATCG AGGCTCATGG TGGGCGAATT
TGGTGTACCT CCGCTGACGG CGTGACGAGT TTTCACATCG CTCTGCCGCA CGCCAAACAA
TCCACTTCCA AGCCTCAAAC GGCTTAA
 
Protein sequence
MRAQSSLVKR LTLMFMFAVI AVLVVAGVSF YMLSQHHFQM LDEQALAEKL ESTRHILSLS 
AARDELEDQE PQLRALLGAH QDLSAEILDA DGTVLFSDSK ASRIPERFKQ ASSGAVWDWQ
IDSRNFRGIT SQLAIAQAQA PVTVMLMLDV TSHAHFFKTL QWWFGIGLVI SALVSAGLGW
IVAKSGLRPV GQITKVATSM SARSLRERIP LEPVPLELQE LILSFNGMLA RLEDAFVRLS
NFSADIAHEL RTPVSNLLTH TEVVLTKKRD LDAYEDNLYS NLEDLKRMSR MIDDMLFLAK
ADNGLIIPEQ VDIDLVGLVS RLIEYYQLAA EDRSIRLALQ GEGTIRGDRL MIDRAVSNIL
SNALRYTPEG HDIAVRIVEA ADQVNLSVQN NGATIDPEHI NKIFDRFYRA DPARREGSPS
NAGLGLAITR SIIEAHGGRI WCTSADGVTS FHIALPHAKQ STSKPQTA