| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4873 |
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| Symbol | |
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| ID | 5197885 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 5368811 |
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| End bp | 5373028 |
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| Gene Length | 4218 bp |
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| Protein Length | 1405 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640584430 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001265348 |
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| Protein GI | 148557766 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGTTG CTCCTACGCG CCTGAACATC TGGAAGTCGC GTTCCTCTCC CTTCGTCATC
GCTTGGGCGG CGTTGGCGGC TCCCGCTATC GCGCAGTCGG TTCCAGCGCC CGCGCCGCCA
ATCAGGTCGG TGATCGACGA GAATGGTGTC GATCTCTCGC GCGGCACCTT CAACGTGACG
ACGCCGGGCG TTTCGATCGG GGCGGGCCCT GGTGCCCTTT CCTTCTCGCA GACCTGGACC
GGATCGGGAT GGCGGGACAC CATAACGGCC ACGTTGACCG GAAACCTCGC GCATCCGGTG
GTGAGCATCG GCGGTATTTC CGAAAGTTTC ACCGCTGACA GCGCTGGCAA TTACACGGCA
GATCAAGGCA ATGGCGCATC CTTGACCTAT TACAGTGCCT TCAATCAGTA CAAATATGTC
GGTCGGGATG GAACTCGGAT ATCCTTCTCC CCCGTTGTCA TCAACCGCAT GGCATCGAAT
TTAGGAACGG CTGAAATCAT TACTACGCCT GATGGAAATC AGACGGTCTA TCGTTTCGAG
TGGGCGAACT ATCTATGGAG AACGATTTCG ATATCCAACG ATTATGGATA TCAAATCCGT
TTCAGCTATG CGAGCAACAA TCCTCAGTTC CCAGTTGAAT TTGGAACAAT AACTAAGGCT
GTTGCCTCCA ACGGTATTAT CGACTATTGT AGTGAAACCG ATCCAGCGCC TTGTAATTAC
TCACGAAAAT GGCCATCCAT TTCATTCGCA TTAACGGGCG ACTATAATTC CGGATCGCAG
ACCGTCAATG ACGCGATGAA CAATGTTACC CGCTATACGT ATAGCGGTGG CAAGATCGTC
GCCATCAAGC GGCCGGGATC TACTACCGAC ACAATAGGCA TCGGTTACGA TGCCAATCTC
CGAGTGAACG GTTACAATAA TTCAGCCTCC AACTGGACCT ACACTTATGT CGATGCGGGT
TCTACCCGTA CGACCACGCG CACGAACGTC GCGGGTAAAT CCATTCAGGC GGTGACCGAT
CCGTTCAACG GGATTCTGAC CTCCTACCGT GACGAGAACA ATCACACGAC CAGCTATCTC
CATGATAGCC TGGGGCGCCT CACTCGCGTG ACGGCCCAGG AGGGTAATTA CGTCGGTTAC
GGCCTTGATG CCCGTGGCAA TGTGAGTTCG ACGACATATG TCGCCAAAGG CGGGTCTGTG
CCGAATATCG TCACATTGGC GTCCTTTCCC GCCACCTGTA CGGTGATCTT CACCTGCAAC
AAGCCACAGA CGACGACCGA CGCGAAGGGG AATGTAACCA ACTATACCTA TGATCCGGCC
AACGGAAATC TGCTGACGGT CGCGGCGCCG GCAGTAACGG GCGGACGGCC GACCACCACT
TACAGCTACA CCCCGCTCAG TGCTTATTTC AAACGCTTCC CGGACGGCAG CTTCTCGGCG
GCTGCTCCCA TTTCGACACT GACGGGCGTC ACTATATGCC GCACGGCCGC GACCTGTCCG
GGCAATGTCA ATGAGAACAA GTCGACCTAC GCCTATGGCA CGCCGAGCAC TCCCAACAAC
CTGCTGCTGA CCGCGGAATC GCACGGCGCA GGCAATGGCT CGCTGACGGC CACCACCAAC
TACGGCTATG ACCCGGTGGG CAATCGCCTG ACGATCGACG GACCCAATCC TGGAAGTGCC
GACACGACGC GCTTCCGCTA CGATATGAAT CGCCAACTGG TGGGTATCGT CGGTCCTGAC
CCGGATGGCG CGGGTACGCT CAAGAACCGG GCGCAACGCT ACACCTACAA CGCCGATGGG
CGAGTGACCC TCATCGAACA GGGTACCACG CCTGGGCAAG CCGATAATGA TTGGGCGCAA
TTCAACAGCT TGCAGGAGCA AGCGACTGGC TATGACAACG CGATGCGTCC CTATCGCACC
GCTACGATAG CGGGCGGCAT CATGTATACG CTGACCGAAT TCAGCTATGA TGCACTTGGT
CGGCCTGATT GTGTGGCTGT CCGGATGAAT CAGCCGACCT TCGGTTCGGT GACGCCGGCC
TGCACCCAGG TCACGCCGGC CGGCGGTTTC GGGCGCGATC GGATTCTGAA ATATGGCTAT
GACGCCGCTG GCCAGGTTCT CAGCGTCACT ACGGGTTATG GCACGACACT CAGCCGGGCG
GAAGCAAGCT ACACATATAC CCCGAACGGC CAGATCGCCT CGATGGCCGA TGCCAAGAAT
AATCTCACCA GCTATGTCTA TGACGGTTTC GATCGGCTGA AGGTTACCTA TTTCCCGAAC
AAGACCGGTG GCGGCTCGAC CTCGAATTGC GCTTTGTCGA CGACGGACTG TGAGGAACTG
ACCTACGATG CCAACAGCAA CATCGTCGAT CGTCGGGTCC GAAATGGGAG CCACATCGTT
CAGGCCTTCG ATGCCTTGAA TCGGTTGGCG TCGCGCAGCT TGCCTGCGGG TTCCGGCAAT
CCCAACCCGG CCTTCACATA TGATCTGGTC GGCAATCTGC TGACGGCGAA CAATTCCAAC
AGCAGCCCGG TCTATTCCCA TGGATTGACC TTCACCTGGG ACGCGCTCGG CCGGAAGCGC
AGCGAGACTT CGACCTATAA TGGTACCGGC GCCATCATGA AGACGATGGA CTATGATCTT
GCAGGAAACC GGACCAAATT CGCGTGGCCT GACCTCTACG TTACCTATGA CTATGACAAC
GTCAATGAGA TGACGGCCGC CCGTGAGAAT GGCGGCTCCT TTGTCCTGGC AAGCTTCACT
TACGATGATC TTGGCCGCCG TACCAGCCTG ACCCGCGGCA ACAACACTCA GACCAACTAC
ACTTATGACC CGGTTTCTCG GCTCGAGACG ATCGGTTTCG GAGGAGGTGG TTCAGGCACG
CTGATCACAT TGTGGAACTA TAATCCCGCT AATGAAATCG GGGCGCGCGT CAACAGCAAC
GATGCCTATG CCTGGACCGG CGGTGTCAAC GCCAACAAAT CCTACGGGCG CAACGGCCTC
AACCAATATA CCACCGTTGG TTCATCGAGC TTGTCCTATG ATCCCAAGGC GAACCTGACC
TCGATCAATG GCGTGGCCTA TACCTTTGGC ACCGAGAACA CGCTGACCAC CGGCGCGGGC
GGCTCCTATT GGCATGACGC CCTGCAGCGG ATCACTTATT TGACCTCGAC CAGTCAGCGC
CAGGATTATG ACGGTGATCA GCTCATTGGT ATCTACAACA GCGCCAACAC TCTCGTTCGC
CGTTATGTGT TCGGGCCCGG CATCGATGAG CCGATCCTGT GGTATGAAGG GACGGGCACC
GCTGACCGAC GCTATATGGA CGCTGACGAG CGAGGTTCGA TCATTCGTGT AACCAGCCAG
GGTGGCGGGC TTATACGGAT CAACACGTAT GACGAGTTCG GCGTGCCTGG TGCGAACAAT
CTCGGCAGAT TCCAATATAC CGGTCAGGTT TGGATGGCGG ATATCGGTAA GTATAATTAC
AAAAATCGTC TCTATGCCCC GGAGATCGGG CGCTTCATGC AGCCGGACCC GATCGGCTAT
GATGGAGGAG CGAACCTGTA CAATTATGTG GGAGCGAATC CGGTCAATTT CACTGACCCG
ATGGGTTTCG CTCCTGATTC TAATAATCAA TGCACGGCTT GGTGGTGTAC CCTTGTTGCG
TCAGGCGCAG TGCCTGGCGA GCCGTCAGGC TCATCGAGTG GAGGCGGAGC TCCGATCTTT
GACCCCTTGG GTGGGGCGAG CTTCAATTTT CAAGGTTGGG GCGCCTTGTC TTCTTTTGTT
GCAAACTCGC CACTATTTAT GACGTATAAA CCCTATATTG ATCTCAGCGC GCCGGCCAAG
CCGAAACCGC AAAATGAAGC GCGCATGAAA CCGGAAACCA AGAAGTACCT TTGCGGGAAA
CTGAGCTCCA ACGAATTCAA TGTTCCTAAG ACATTTCGCA ATGTTCTAAC GGACAGGCAT
AGTCGAACGA ATGGAAAAAG TAACTGGAGT GTGCCGCGAT TTAGACAAGC TGAAAATTTT
CTTTATGCTA CGGGGCAATG GCGCTCTCCT TCAACGGATG GTTCGACTTA TCCAGGTGTT
TATATTCATC AATTTTCTAA GTATGTTTCT TCTAATACCT CCGAATTCTC CTGGGATGCT
TTGAATGCAG GTCTGGATGG CGTTGACCAT AAGAACGACA CCGCTGCCGA GCTAAAGGCG
TTTTGCAATG TCAGATAA
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| Protein sequence | MAVAPTRLNI WKSRSSPFVI AWAALAAPAI AQSVPAPAPP IRSVIDENGV DLSRGTFNVT
TPGVSIGAGP GALSFSQTWT GSGWRDTITA TLTGNLAHPV VSIGGISESF TADSAGNYTA
DQGNGASLTY YSAFNQYKYV GRDGTRISFS PVVINRMASN LGTAEIITTP DGNQTVYRFE
WANYLWRTIS ISNDYGYQIR FSYASNNPQF PVEFGTITKA VASNGIIDYC SETDPAPCNY
SRKWPSISFA LTGDYNSGSQ TVNDAMNNVT RYTYSGGKIV AIKRPGSTTD TIGIGYDANL
RVNGYNNSAS NWTYTYVDAG STRTTTRTNV AGKSIQAVTD PFNGILTSYR DENNHTTSYL
HDSLGRLTRV TAQEGNYVGY GLDARGNVSS TTYVAKGGSV PNIVTLASFP ATCTVIFTCN
KPQTTTDAKG NVTNYTYDPA NGNLLTVAAP AVTGGRPTTT YSYTPLSAYF KRFPDGSFSA
AAPISTLTGV TICRTAATCP GNVNENKSTY AYGTPSTPNN LLLTAESHGA GNGSLTATTN
YGYDPVGNRL TIDGPNPGSA DTTRFRYDMN RQLVGIVGPD PDGAGTLKNR AQRYTYNADG
RVTLIEQGTT PGQADNDWAQ FNSLQEQATG YDNAMRPYRT ATIAGGIMYT LTEFSYDALG
RPDCVAVRMN QPTFGSVTPA CTQVTPAGGF GRDRILKYGY DAAGQVLSVT TGYGTTLSRA
EASYTYTPNG QIASMADAKN NLTSYVYDGF DRLKVTYFPN KTGGGSTSNC ALSTTDCEEL
TYDANSNIVD RRVRNGSHIV QAFDALNRLA SRSLPAGSGN PNPAFTYDLV GNLLTANNSN
SSPVYSHGLT FTWDALGRKR SETSTYNGTG AIMKTMDYDL AGNRTKFAWP DLYVTYDYDN
VNEMTAAREN GGSFVLASFT YDDLGRRTSL TRGNNTQTNY TYDPVSRLET IGFGGGGSGT
LITLWNYNPA NEIGARVNSN DAYAWTGGVN ANKSYGRNGL NQYTTVGSSS LSYDPKANLT
SINGVAYTFG TENTLTTGAG GSYWHDALQR ITYLTSTSQR QDYDGDQLIG IYNSANTLVR
RYVFGPGIDE PILWYEGTGT ADRRYMDADE RGSIIRVTSQ GGGLIRINTY DEFGVPGANN
LGRFQYTGQV WMADIGKYNY KNRLYAPEIG RFMQPDPIGY DGGANLYNYV GANPVNFTDP
MGFAPDSNNQ CTAWWCTLVA SGAVPGEPSG SSSGGGAPIF DPLGGASFNF QGWGALSSFV
ANSPLFMTYK PYIDLSAPAK PKPQNEARMK PETKKYLCGK LSSNEFNVPK TFRNVLTDRH
SRTNGKSNWS VPRFRQAENF LYATGQWRSP STDGSTYPGV YIHQFSKYVS SNTSEFSWDA
LNAGLDGVDH KNDTAAELKA FCNVR
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