Gene Swit_4869 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_4869 
Symbol 
ID5197881 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp5365057 
End bp5366055 
Gene Length999 bp 
Protein Length332 aa 
Translation table11 
GC content72% 
IMG OID640584426 
ProductSAF domain-containing protein 
Protein accessionYP_001265344 
Protein GI148557762 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3745] Flp pilus assembly protein CpaB 
TIGRFAM ID[TIGR03177] Flp pilus assembly protein CpaB 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.778513 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACGCGA GGAAGTTGCT GCTGCTGATC ATGGCGCTGG TCATGGCGGG CATCTCGGCA 
GTCGTGGCGC GCAGCATGTT CGGCGGCAAC AGCGAGGCCG AGGCGGCCCC CGCCGCCGCG
CCCCAGCCGA GCGGCCCCGA GGTCGCCGTC GCGGTCCGCC CGCTGCCGGT CGGCACGATC
ATCGGCCCGG AAAGCTTCCG CTACCAGCGC TGGCCGGCCG AGCTGGTCAG CAAGACCTAT
TTCATCAAGG GCGAGAGCGA TCTCGCCGCG CTCAACGGAT CGGTCGTCCG CTACGCGATC
ACCGCCGGCG CGCCGGTCAC GCAGGGCGCG CTGGTCAAGC CCGGCGATCG CGGCTTCCTG
GCCGCGGCGC TCGGCCCCGG CATGCGCGCC GTCACCATCT CCGTCTCGGC CCAGTCGGGC
GTCGCCGGCT TCGTCTTCCC CGGCGACCGG GTCGACCTGA TGCTGACCCA GGAGGTTCCG
GGCGGGGGCG ACGGCCCGCC GCTCAAGGCC GCCGAGACGA TCATCCGCAA CATCCGCGTC
CTCGCCGCCG ACCAGCGCAC CGACAAGACG GTCGACGAGG AGGGCAAGAC GGTGGTCGCC
AACACGTCGA ACGTCACGCT GGAGGCGACC CCGAAGATCG CCGAGAAGAT CGCCGTCGCG
CAGACGATCG GCCAGCTCTC GCTCGCGCTC CGCTCGATCG CCGACGACAG GGCCGAACTG
GAGGAGCGGA TCGCCAATGG CGACATCAAG CTGCCGGCCC AGGGCGATCC CAAGGCCGAG
CGCCAGATGC TGCTCGAGAT CACATCGCGC CCGATCGACA CCAACACCAC CTATACGGTC
GGCGCCGACG TCTCGCGCTA CCAGCGGTCG AGCATTCCCG CCAAGGCCGG CGGCGACGCC
GCCCCCGCCC CGTCGAGCGC CCCCGCCGCC CCAGCCGGCC CCGCCGTCCG CGTGGCGCGC
GGCAACAACG TCACCGTCAG CACGGTCGGA GCCCGGTGA
 
Protein sequence
MDARKLLLLI MALVMAGISA VVARSMFGGN SEAEAAPAAA PQPSGPEVAV AVRPLPVGTI 
IGPESFRYQR WPAELVSKTY FIKGESDLAA LNGSVVRYAI TAGAPVTQGA LVKPGDRGFL
AAALGPGMRA VTISVSAQSG VAGFVFPGDR VDLMLTQEVP GGGDGPPLKA AETIIRNIRV
LAADQRTDKT VDEEGKTVVA NTSNVTLEAT PKIAEKIAVA QTIGQLSLAL RSIADDRAEL
EERIANGDIK LPAQGDPKAE RQMLLEITSR PIDTNTTYTV GADVSRYQRS SIPAKAGGDA
APAPSSAPAA PAGPAVRVAR GNNVTVSTVG AR