| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4868 |
|---|
| Symbol | |
|---|
| ID | 5198217 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 5363477 |
|---|
| End bp | 5365057 |
|---|
| Gene Length | 1581 bp |
|---|
| Protein Length | 526 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640584425 |
|---|
| Product | type II and III secretion system protein |
|---|
| Protein accession | YP_001265343 |
|---|
| Protein GI | 148557761 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGCCT CCATGAAGTT CCTGGCCGGC GGTGCGCTGA TCACTGCGAT CGCGCTGGCC
CCGGTCGCGG CAAGCGCTGC CGTCCGCCCC TCGCGCGGCG CGGCGGCCGT GCGCACCGCG
ACGATCGGCA AGCCCAGCGA GACCACCACC CTGTCGATCG GATCGGGCCA GATGATCGCG
CTGTCGGCGC CGATCAGCGA CCTGTTCGTC GCCGACGACA AGATCGCCGA CGTCCAGGTG
CGTTCGACCA CGCAGCTCTA CCTGTTCGGC AAGGGCGCCG GCGAGACGGC GGTCTATGCG
ACCGACAAGG CCGGCAACGT CGTCTGGTCG TCGATCGTCC GCGTCGGCAG CAACATCACC
AGCGTCGACA CGATGCTGAA GCTGGCGATG CCCGAGGCGG CGATCACCGC GACGACGATG
AACGGCATCG TCCTGCTGAC CGGCACGGTC GCCTCGCCCA GCGACGTCGA GGAAGCGCAG
AAGCTGGTCG AGCAGTTCGT CGGCAAGGAG ACCCAGGTCG TCAACCGGCT CAAGTCGGCG
GTGCCGCTGC AGGTCAGCCT GCACGTCAAG ATCGCCGAGG TCAGCCGCGA ATTCGCCAAG
TCGATCGGCA TCAACCTGCT CAACCGCGAC ACCACGGGCG GCTTCCTGTT CGGCGTGGCG
CAGGGACGTA ATTTCGGGTC GATCGGGAAT CTCGACACCT CGGCCTTCCC GAAGCTCGAC
GCCTCGTCGC TCTACGGGCT GCCGGCCGGA TCGCTGTCGC TGCCGTTCAA TCCGGCGACC
GGACAGTTCA TCGCGGGCGG CACCGCCTAC ACCTTCGACA AGCTGGGCAA GGGCGCCGGA
TCGGGAACCT CGTTCGGCCT CGCCGGCAAG TTCCTGGGCA TGGACCTCGC CGCCGCGATC
GACCTGGCCG AGGCGGACGG GCTCGTCACC ACCCTCGCCC AGCCGAACCT GACCGCGATC
TCCGGCGAGA CCGCGAGCTT CCTGGCCGGC GGCGAGATCC CGATCCCGCT CGCACAGGGG
CTCGGCGCGG TGTCGGTCGA GTTCAAGCAA TATGGCGTCA GCCTGTCCTT CACCCCGACG
GTGCTCGGCG ACGGGCGCAT CTCGATCCGG GTGCGGCCCG AAGTGTCGCA GCTCACCGAC
GCGGGCTCGG TCCGCCTCAA CGGCTTCACC ATCCCCGGCA TCACCACCCG CCGGGCGGAG
ACCACGGTCG AGCTCGGCTC GGGCCAGGCC TTCATGATCG GCGGCCTGTT GTCGAACGCG
CAGAACAGCA ATGTCGACAA GGCGCCGTTC CTCGGCGACC TGCCGATCCT CGGCGCGCTG
TTCCGGTCGA ACGGGTTCAA GCGCAACGAG ACCGAGCTGA TGATCGTCGT CACCCCCTAT
CTGGTGAAGC CGGTCTCGCC GCAGCAGATC GCCCTGCCGA CCGCGGGCTT GCGCGCCGCC
ACCGACGGCG AGCGGCTGAT CGCCGGGCAG ACCTTCATGG GCAAGTCGGG CGAGAAGAGC
CCCGCCCCGG CCGCCGCGCC GCCGCGCACC ATCCCCGACA AGGCCGCGCC GGTTCCCAAT
GCCGGCTTCT CGCCCAATTG A
|
|---|
| Protein sequence | MRASMKFLAG GALITAIALA PVAASAAVRP SRGAAAVRTA TIGKPSETTT LSIGSGQMIA
LSAPISDLFV ADDKIADVQV RSTTQLYLFG KGAGETAVYA TDKAGNVVWS SIVRVGSNIT
SVDTMLKLAM PEAAITATTM NGIVLLTGTV ASPSDVEEAQ KLVEQFVGKE TQVVNRLKSA
VPLQVSLHVK IAEVSREFAK SIGINLLNRD TTGGFLFGVA QGRNFGSIGN LDTSAFPKLD
ASSLYGLPAG SLSLPFNPAT GQFIAGGTAY TFDKLGKGAG SGTSFGLAGK FLGMDLAAAI
DLAEADGLVT TLAQPNLTAI SGETASFLAG GEIPIPLAQG LGAVSVEFKQ YGVSLSFTPT
VLGDGRISIR VRPEVSQLTD AGSVRLNGFT IPGITTRRAE TTVELGSGQA FMIGGLLSNA
QNSNVDKAPF LGDLPILGAL FRSNGFKRNE TELMIVVTPY LVKPVSPQQI ALPTAGLRAA
TDGERLIAGQ TFMGKSGEKS PAPAAAPPRT IPDKAAPVPN AGFSPN
|
|---|
| |