Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4865 |
Symbol | |
ID | 5198214 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 5360440 |
End bp | 5361414 |
Gene Length | 975 bp |
Protein Length | 324 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640584422 |
Product | type II secretion system protein |
Protein accession | YP_001265340 |
Protein GI | 148557758 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4965] Flp pilus assembly protein TadB |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGACGA TGCTCTTCCT GATGGTCATG GCCGCGGTCG TGCCCGTCTT CATCTTCGTG CTGGCGCGCC CGCCCGCGCA GCGCGCCTTC GCGCGTCGCC TGTCGACGGT GCGGGGACGC TACAACGTCA ATGGCGAGCC CGGCGTCAAC GAACAGGTCC GCAAGCTGCT CGCCAGCCGC GCGACGGTGG TGCGGCGCGA GAAGACGCTG CTCAACCGCT TCCTGCCCGA TCCGGCCGAC ATCCATCACC AGATCGAGGC AGCCGGCAAG AAATGGACGG TCCGGCAATA TTATACCGGA TCGGGGTTCG CCTTCGCAGT GCCGATGCTG CTGCTCATGC TGGTCGGGCT GCCGGCGTGG ATGGCGCTGA TCGTCGGCGC CGCGGCGGGG CTCGGCCTCC CCCGGCTGGT GCTGAACATC CTCGCCAAGC GGCGGATCGC GCAGTTCATC ACGCGCTTCC CCGACGCGAT CGAACTGCTG GTGCGCGGCC TGCGCGCCGG CCTGCCGATC GCCGAGACGA TGGGCGCGGT CGCGTCCGAG ATCGAAGGTC CGGTCGGCAG CGAGTTCCAG GCGGTCAGCG ACCGCATGCG GATCGGCCGC ACGCTGGAGG GCGCATTGCA GGAGACCGCC GATCGGCTGG GCACCGCCGA GTTCCAGTTC TTCGTCATCA CCCTCGCGAT CCAGCGCGAG ACCGGCGGCA ACCTCGCCGA GACGCTCGGC AACCTCGCCG ACGTGCTGCG CAAGCGCATG CAGATGAAGC TCAAGATCTC CGCAATGTCG TCCGAATCCA AGGCGTCGGC CTATATCATC GGCGTCCTGC CCTTCGTCGT GTTCGGGCTG ATCAGCTTCA TCAGCCCGAC CTACATGGCC GGCTTCTTCG CCGACCAGCG GCTGATGATC GCGGGCGCGG GCGGACTGAT CTGGATGTCG ATCGGCGCCT ATATCATGCG CCAGATGATC AATTTCGAGA TCTGA
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Protein sequence | MLTMLFLMVM AAVVPVFIFV LARPPAQRAF ARRLSTVRGR YNVNGEPGVN EQVRKLLASR ATVVRREKTL LNRFLPDPAD IHHQIEAAGK KWTVRQYYTG SGFAFAVPML LLMLVGLPAW MALIVGAAAG LGLPRLVLNI LAKRRIAQFI TRFPDAIELL VRGLRAGLPI AETMGAVASE IEGPVGSEFQ AVSDRMRIGR TLEGALQETA DRLGTAEFQF FVITLAIQRE TGGNLAETLG NLADVLRKRM QMKLKISAMS SESKASAYII GVLPFVVFGL ISFISPTYMA GFFADQRLMI AGAGGLIWMS IGAYIMRQMI NFEI
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