Gene Swit_4864 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_4864 
Symbol 
ID5198213 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp5359440 
End bp5360432 
Gene Length993 bp 
Protein Length330 aa 
Translation table11 
GC content67% 
IMG OID640584421 
Producttype II secretion system protein 
Protein accessionYP_001265339 
Protein GI148557757 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2064] Flp pilus assembly protein TadC 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGCCCG CCCCCTCCCC CCAGTTCTTC GACACGCTGC TGTCGATCGG CATCGCGCTG 
GCCACGGCGA TCGTCATGCT GGTGGTCGGC CATGCGCTGG TGAAGTCGAT CGCCCGCGAT
CCGATGGCGC GACGGGTCCG CGCGCTCAAC GACCGGCGCG AGCAGCTCAA GGCCGGCGTC
GCCGCGTCGA AGACCCGCCG CCGCCAGAAG ATGGACAAGA AGGCCAGCAT CTCGGTCGAC
CGGATGAAGG CGATCCTCGG CAGCATGAAG ATGCTCCAGG ATTCGCAGCT CAAGGCCGCC
TCGCTGAGCC TGACCCGCGC CGGCATCCGC ACCAAGGACG CCGCGATCAC GGTGATCTTC
TTCCGGCTGG TGTCGCCGGT CCTGATCGGC GGCACGGCGG TCGTCGGCGT CTATGTGCTC
CACTGGTTCC CGGAGGCGAG CGCCTTCAAG CAATATATGA TCGTCGCCGG CGCGCTGATC
GCCAGCTACA AGGCGCCCGA CGTCTATGTG AAGAACCTGA TCACCAAGCG GCAGCAGGCG
ATCCGCAAGG CGCTGCCCGA TGCGCTCGAC CTGCTGGTGA TCTGCGCCGA GGCGGGCCTG
TCGGTCGACC TCGCCTTCAA CCGGGTCGCG CGCGAGCTGT CCAAGGCCTA TCCCGAACTG
GGCGACGAAT TCGCGCTGAC CGCGATCGAA CTGGGCTTCC TCACCGACCG GCGTCAGGCG
TTCGAGAACC TCGCCCAGCG CGTGAACCTC GATTCGATCC GAGGCGTCGT CACGACGATG
ATCCAGACCG AGAAATACGG CACCCCGCTC GCCGCCGCGC TGCGCGTGCT GTCGGCCGAG
TTCCGCCACG AACGGATGAT GCGCGCGGAG GAAAAGGCCG CGCGGCTGCC CGCGATCATG
ACGGTGCCGC TGATCATGTT CATCCTGCCG GTGCTGTTCA TCGTCATCCT CGGCCCGGCG
GCCTGCTCGA TCCGCGACAA TGTGATCCAT TGA
 
Protein sequence
MQPAPSPQFF DTLLSIGIAL ATAIVMLVVG HALVKSIARD PMARRVRALN DRREQLKAGV 
AASKTRRRQK MDKKASISVD RMKAILGSMK MLQDSQLKAA SLSLTRAGIR TKDAAITVIF
FRLVSPVLIG GTAVVGVYVL HWFPEASAFK QYMIVAGALI ASYKAPDVYV KNLITKRQQA
IRKALPDALD LLVICAEAGL SVDLAFNRVA RELSKAYPEL GDEFALTAIE LGFLTDRRQA
FENLAQRVNL DSIRGVVTTM IQTEKYGTPL AAALRVLSAE FRHERMMRAE EKAARLPAIM
TVPLIMFILP VLFIVILGPA ACSIRDNVIH