Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4864 |
Symbol | |
ID | 5198213 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 5359440 |
End bp | 5360432 |
Gene Length | 993 bp |
Protein Length | 330 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640584421 |
Product | type II secretion system protein |
Protein accession | YP_001265339 |
Protein GI | 148557757 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2064] Flp pilus assembly protein TadC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGCCCG CCCCCTCCCC CCAGTTCTTC GACACGCTGC TGTCGATCGG CATCGCGCTG GCCACGGCGA TCGTCATGCT GGTGGTCGGC CATGCGCTGG TGAAGTCGAT CGCCCGCGAT CCGATGGCGC GACGGGTCCG CGCGCTCAAC GACCGGCGCG AGCAGCTCAA GGCCGGCGTC GCCGCGTCGA AGACCCGCCG CCGCCAGAAG ATGGACAAGA AGGCCAGCAT CTCGGTCGAC CGGATGAAGG CGATCCTCGG CAGCATGAAG ATGCTCCAGG ATTCGCAGCT CAAGGCCGCC TCGCTGAGCC TGACCCGCGC CGGCATCCGC ACCAAGGACG CCGCGATCAC GGTGATCTTC TTCCGGCTGG TGTCGCCGGT CCTGATCGGC GGCACGGCGG TCGTCGGCGT CTATGTGCTC CACTGGTTCC CGGAGGCGAG CGCCTTCAAG CAATATATGA TCGTCGCCGG CGCGCTGATC GCCAGCTACA AGGCGCCCGA CGTCTATGTG AAGAACCTGA TCACCAAGCG GCAGCAGGCG ATCCGCAAGG CGCTGCCCGA TGCGCTCGAC CTGCTGGTGA TCTGCGCCGA GGCGGGCCTG TCGGTCGACC TCGCCTTCAA CCGGGTCGCG CGCGAGCTGT CCAAGGCCTA TCCCGAACTG GGCGACGAAT TCGCGCTGAC CGCGATCGAA CTGGGCTTCC TCACCGACCG GCGTCAGGCG TTCGAGAACC TCGCCCAGCG CGTGAACCTC GATTCGATCC GAGGCGTCGT CACGACGATG ATCCAGACCG AGAAATACGG CACCCCGCTC GCCGCCGCGC TGCGCGTGCT GTCGGCCGAG TTCCGCCACG AACGGATGAT GCGCGCGGAG GAAAAGGCCG CGCGGCTGCC CGCGATCATG ACGGTGCCGC TGATCATGTT CATCCTGCCG GTGCTGTTCA TCGTCATCCT CGGCCCGGCG GCCTGCTCGA TCCGCGACAA TGTGATCCAT TGA
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Protein sequence | MQPAPSPQFF DTLLSIGIAL ATAIVMLVVG HALVKSIARD PMARRVRALN DRREQLKAGV AASKTRRRQK MDKKASISVD RMKAILGSMK MLQDSQLKAA SLSLTRAGIR TKDAAITVIF FRLVSPVLIG GTAVVGVYVL HWFPEASAFK QYMIVAGALI ASYKAPDVYV KNLITKRQQA IRKALPDALD LLVICAEAGL SVDLAFNRVA RELSKAYPEL GDEFALTAIE LGFLTDRRQA FENLAQRVNL DSIRGVVTTM IQTEKYGTPL AAALRVLSAE FRHERMMRAE EKAARLPAIM TVPLIMFILP VLFIVILGPA ACSIRDNVIH
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