Gene Swit_4793 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_4793 
Symbol 
ID5197955 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp5278234 
End bp5280852 
Gene Length2619 bp 
Protein Length872 aa 
Translation table11 
GC content72% 
IMG OID640584350 
Producthypothetical protein 
Protein accessionYP_001265268 
Protein GI148557686 
COG category[S] Function unknown 
COG ID[COG0392] Predicted integral membrane protein
[COG2898] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0448007 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.10998 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATAATC CGCCCCTCCG CCGCCTGATC GCCCGCCTGC GCGAACGGCG CGGGCCGCTG 
TCGGTCGTCC TCGTCATGCT GCTGATCGGG ATCGGTTTCG CCGCGCTCCA CCAACTCACC
CAGACGCTGC GGTTGCAGGA CATATTGGCG GCGTTCGACG CGATCGGCTC CCGCCAGGTG
GCGCTCGCGA TCGGCTGCAC CGTCGCCAGC TATGTCGCGC TGACCTTCTA CGACCTGCTC
GCGCTGCGCG TCATCGGCCG GCCGCTGCCC TGGCGGACCG CCGCGCTCGC GTCCTTCACC
AGCTACACGA TCAGCCACAA TCTCGGCCTC GCGCTGATCA CCGGCGGATC GGCGCGCTAC
CGCATCTACA CCGCCGCCGG CCTGTCGGGC GGCGACGTGG CGCGGATCGT CGCGATCGCC
TCGGCGACCT TCTGGATGGG GGTGCTGGCG ATCACCGGCC TCGCCCTCGC CTTCCACCAG
GGCGGACTGT CGCTGGCGGG GGTCGCGCTG GGCGGGACCG CCGCGCGCGT CGCCGGCGGC
GCGATCCTCG CCGGGGCGGC CGGCTTCGTC CTCGCCTGCG CCTTCGGCCC GCGCGAGATC
CGGCTGTTCG GCTGGACGCT GCCATTGCCG GGCGCGGGCG TCGCGCTCGG CCAGATCGCG
ATCGCGGGGA TCGACCTCGC CGCCGCCTCG GCGGCGCTGT TCGTCCTGAT CCCCGGCGCC
GATCCGGCGC TGCTCCCCGC CTTCCTCCTC GCCTATGCGC TCGGCATCAT CGCCGCGCTG
GTCAGCCATG TCCCCGGCGG CATCGGCGTG TTCGAGGCGG TGGTGCTGGC GACCGTCCCG
GCCGACCGGC CCGCGCTCGC CGCCGCGCTG ATCGCCTATC GGCTGATCTA TTATCTGCTG
CCGCTGGCGC TCGGCATCGT CGCGCTGGTG CTGCACGAGG GCCGCCAGCG CCGCCTCGGC
CGCGCGATCG CGGGGGTGCG GCTGGTCGCC AACGGCCTCG CCCCGCTGCT GATGGGCGTG
GCGAGCTTCC TCGGCGGCGC GGTGCTGCTG CTGTCGGGAT CGACCCCTGC CGTTCCCGCC
CGCCTGCACA CGCTGCACGC GATCGTGCCG CTGCCCTTCA TCGAGGCGTC GCACCTCGCC
GCCAGCCTGG TCGGCACCGG GCTGCTGCTG CTCGCGCCCG GCCTCTACCG CCGCCTCGAC
GGCGCCTTCG TCGCCGCCCG CGCGCTGCTG ATCGCCGGGG CGATCTTCTC GCTGGCCAAG
GGCATCGACT ATGAGGAGGC GATCGTCTGC CTGACGATCG CGGCGCTGCT GCAATGGACC
AGCCCGGCCT TCTACCGGAC CACGGCCTTC GTCGCGCGCG CCTTCTCGCT CGCCTGGCTG
GTCTGCGTCG CGGCGGTCGG CGGCCTCAGC CTGTGGGTCG GCCTCTTCTC CTACAAGCAT
GTCGCCTATC AGAACGCCCT GTGGTGGGAC TTCGCGCTGC ACGGCGACGC GTCGCGCTAC
CTGCGCGCCA GCCTCGGCAC AGCCGTGCTG CTCGCCGGGG TGGCGCTGGG GCGGCTGTTC
GCGCCGGCCG CGCCCCGCCG CGACCAGACG GCGCTGCCGG CCGAGGTCGC CGACGTGATC
GAGGGCGCCG AGCGCACCGA TGCGATGCTC GCCTATACCG GCGACAAGCG CTTCCTCTTC
TCCCCCGACG GCGACGCCTT CCTGATGTAC CAGATCCGCG GATCGAGCTG GATCATGATG
GCCGATCCGG TCGGCCCGCG CGCCGCCTGG GCCGGCCTGC TCTGGACGAT CCGTTCGATG
GCGGACGCCG CGCAGGGCCG GCTGATGCTC TACCAGATCA GCAGCGACAT GCTCGAACTG
GCGATCGCGC TGGGCCTGCA GATCGTCAAA TATGGCGAGG AGGCGATCGT CGACCTCGCC
GCTTTCTCGA TCGAGGGGCC GCGGATGCGC TCGATCCGCC AGACGGTTCG CCGCGCCGAG
CGCGAGGGCG CGACCTTCGA AGTCGTCCCC GCCGCCGAGG TCGCCGCGAT CATCCCCGAC
CTTGCCGCCA TCTCCGACGA ATGGCTGGAG GCGAAGGGCC AGCGCGAGAA GGGCTTCAGC
CTGGGCCGCT TCGATCCCGA CTATGTCGCG CGCTTCGATT GCGCGCTGGT CCGGGTCGAG
GGACGGATCG TCGCCTTCGC CAATATCTGG CGGACGCCCA ACGGACGCGA GCTGTCGGTC
GACCTGATGC GCCATGGCGC GGGATCGCCG CCGGGGGTGA TGGACTATCT GTTCGCCAGC
CTGATGCTGT GGGGCCGGGA GAACGGCCAT GCCCGCTTCT CGCTGGGCCT CGCCCCGCTG
TCGGGGATCG AGGCGCACCG GCTGTCGCCG CTCTGGGTGA AGGCCGCCGC TGCGATCTTC
AAGCGCGGCG AGCGCTTCTA CGGCTTCCGG GGCCTGCGCG CCTACAAGGA GAAATTCGCG
CCGGTCTGGG AACCGCGCTA CATTGCAGCG CCGCATGGCC TCGGCCTCGT CCGGGCGATG
CGCGACCTCA ACCAGCTGAT CGGCCGCCCG CATCCGGTGT CCGATCGCGC CGCCTCCCCG
GCGGCGGCCG ATGCCGACCC GCCCCGCCTC GCCGCCTGA
 
Protein sequence
MHNPPLRRLI ARLRERRGPL SVVLVMLLIG IGFAALHQLT QTLRLQDILA AFDAIGSRQV 
ALAIGCTVAS YVALTFYDLL ALRVIGRPLP WRTAALASFT SYTISHNLGL ALITGGSARY
RIYTAAGLSG GDVARIVAIA SATFWMGVLA ITGLALAFHQ GGLSLAGVAL GGTAARVAGG
AILAGAAGFV LACAFGPREI RLFGWTLPLP GAGVALGQIA IAGIDLAAAS AALFVLIPGA
DPALLPAFLL AYALGIIAAL VSHVPGGIGV FEAVVLATVP ADRPALAAAL IAYRLIYYLL
PLALGIVALV LHEGRQRRLG RAIAGVRLVA NGLAPLLMGV ASFLGGAVLL LSGSTPAVPA
RLHTLHAIVP LPFIEASHLA ASLVGTGLLL LAPGLYRRLD GAFVAARALL IAGAIFSLAK
GIDYEEAIVC LTIAALLQWT SPAFYRTTAF VARAFSLAWL VCVAAVGGLS LWVGLFSYKH
VAYQNALWWD FALHGDASRY LRASLGTAVL LAGVALGRLF APAAPRRDQT ALPAEVADVI
EGAERTDAML AYTGDKRFLF SPDGDAFLMY QIRGSSWIMM ADPVGPRAAW AGLLWTIRSM
ADAAQGRLML YQISSDMLEL AIALGLQIVK YGEEAIVDLA AFSIEGPRMR SIRQTVRRAE
REGATFEVVP AAEVAAIIPD LAAISDEWLE AKGQREKGFS LGRFDPDYVA RFDCALVRVE
GRIVAFANIW RTPNGRELSV DLMRHGAGSP PGVMDYLFAS LMLWGRENGH ARFSLGLAPL
SGIEAHRLSP LWVKAAAAIF KRGERFYGFR GLRAYKEKFA PVWEPRYIAA PHGLGLVRAM
RDLNQLIGRP HPVSDRAASP AAADADPPRL AA