| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4788 |
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| Symbol | |
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| ID | 5199331 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 5272518 |
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| End bp | 5273714 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640584345 |
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| Product | methylitaconate delta2-delta3-isomerase |
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| Protein accession | YP_001265263 |
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| Protein GI | 148557681 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2828] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR02334] probable AcnD-accessory protein PrpF |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.343544 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0960542 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGGCC TTCCCCAGTT CCGCATTCCC GCCACCTATA TGCGCGGCGG CACCAGCAAG
GGCGTGTTCT TCCGGCTGGA GGACCTGCCC GAATCCTGCC GCGTGCCGGG CCCGGCACGC
GACCGGCTGT TCCAGCGCGT GATCGGCAGC CCCGATCCCT ATGCCGGCCA TATCGACGGC
ATGGGCGGCG CCACCTCCAG CACCAGCAAG TGCGTCATCG TCTCGCCGAG CACGCGGCCC
GGCCATGACG TCGACTATCT CTATGGACAG GTCGCGATCG ACACCGATTT CGTCGACTGG
TCCGGCAATT GCGGCAATCT CTCCACGGCG GCGGGCGCCT TCGCGATCCA CGCCGGCCAT
GTCGATCCGG CAAGGGCCGT GGACGGCGTC TGCACGGTGC GCATCTGGCA GGCCAATATC
GGCAGGACGA TCATCGCCTA TGTGCCGGTC GCGAACGGCG AGGTGCGGGA GACGGGGGAT
TTCGAGCTGG ACGGCGTGAC CTTCCCGGCC GCCGAGATCG TCCTCGAATT CGTCGATCCG
GCGGACGACG GCGACGGCGG CGGTGCGATG TTCCCGACCG GAAACCTGAT CGACGAACTC
GACGTGCCCG AGGCGATCGT CCCCGGCGGC AAGCTCCGGG CGACGCTGAT CGACGCCGGC
ATCCCCACCA TCTTCGTCGC CGCGGCCGAT ATCGGCTATG CGGGGACCGA GCTGCGCGAT
GCGATCAACG GCGATGCCGA GGCGCTCGCC CGCTTCGAAA CGCTGCGCGC GATCGGGGCG
GTGCGGATGG GCCTGATCGG TTCGATCGAC GAGGCCGCGC GGCGCCAGCA CACGCCGAAG
ATCGCCTTCG TCGCGCCGCC GAGCGACTAT GTCGCGTCGA ACGGCCGGAT CGTGCGCGCC
GGGGAGATCG ACCTGCTGGT GCGCGCGCTG TCGATGGGCC GGCTCCACCA CGCGATGATG
GGCACGGCGT CGGTCGCGAT CGCGGCGGCG GCGGCGGTGC CGGGCACGCT GGTCCATCGG
GCGGCCGGGG GAGGGGAGCG GCGGGCCGTC CGCTTCGGCC ACCCGTCGGG AACCCTGCGC
GTCGGCGCGG AGGCGAAGCT GGTCGACGGG CGATGGACCG TCGCCCGCGC GATCATGAGC
CGCAGCGCCC GCATCCTGAT GGAAGGCTGG GTGCGGGTCC CCGCCGACGG CTTCTGA
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| Protein sequence | MSGLPQFRIP ATYMRGGTSK GVFFRLEDLP ESCRVPGPAR DRLFQRVIGS PDPYAGHIDG
MGGATSSTSK CVIVSPSTRP GHDVDYLYGQ VAIDTDFVDW SGNCGNLSTA AGAFAIHAGH
VDPARAVDGV CTVRIWQANI GRTIIAYVPV ANGEVRETGD FELDGVTFPA AEIVLEFVDP
ADDGDGGGAM FPTGNLIDEL DVPEAIVPGG KLRATLIDAG IPTIFVAAAD IGYAGTELRD
AINGDAEALA RFETLRAIGA VRMGLIGSID EAARRQHTPK IAFVAPPSDY VASNGRIVRA
GEIDLLVRAL SMGRLHHAMM GTASVAIAAA AAVPGTLVHR AAGGGERRAV RFGHPSGTLR
VGAEAKLVDG RWTVARAIMS RSARILMEGW VRVPADGF
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