| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4751 |
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| Symbol | mnmA |
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| ID | 5196316 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 5228555 |
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| End bp | 5229946 |
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| Gene Length | 1392 bp |
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| Protein Length | 463 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640584307 |
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| Product | tRNA-specific 2-thiouridylase MnmA |
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| Protein accession | YP_001265226 |
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| Protein GI | 148557644 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
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| TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0241172 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGCCG GTCCAGTCGC CGTCGCGCGC GAGCCGCGCG GTCGGCGTCT CCGCCTGGTG
GCGGGCGAGC AGGGTGCACA GCGTGGCGAA GTCGAGCGGC GCCTCGGTCG GCTCGGCGCC
GTCGACCCGG AACTTGTTGA TGTCGATTTT CATCGCGTGC CCCGCTGTTG TCCCGTGTCA
GCACAAGAAA CGGCTTCGCG GGGCAAATCT TTAGGGGAAA ATCGCATAAT TTTGCGGGCG
TTGGCCCGAC CTGCTATGGG CGCCCCGATG AACCCGGAAT TCCAGCTCGA AGGCCGCGCG
CCCGGCTCGC TCGCCGGCGC CCGCATCGTC GTCGCCATGT CGGGCGGCGT CGACAGTTCG
GTGGTCGCCG CGCTCGCCGC CGCGAGCGGC GCCGAGACGA TCGGCGTGAC CCTCCAGCTC
TACGATCACG GCGCCGCCGT CGGCCGCACC GGAAGCTGCT GCGCGGGGCA GGACATCCGC
GACGCGCGGG CCGTCGCGGA CAGGCTCGGC ATCGCCCATT ATGTGTTTGA TTATGAAAGC
CGTTTCCGGG ATTCGGTGAT CGCCGACTTC GCCGACGAAT ATGCCGCCGG GCGGACCCCG
ATCCCCTGCG TCCGCTGCAA CCAGGGGGTG AAGTTCACCG ACCTGTTCGG CATCGCCCGC
GACCTCGGCG CGGATTGCCT GGCGACCGGC CATTATGTAC GCCGCGTGGT GGGGGCGGGC
GGCCGCGCCG AGCTGCACCG CGCCGCCGAT CCGGCGCGGG ACCAGAGCTA CTTCCTGTTC
GCCACCACGC GCGACCAGCT CGACTATCTG CGCTTCCCGC TCGGCGCGAT GCCCAAGCCG
CGCGTCCGCG AGATCGCGGC CGAGCTCGGG CTGGGGGTCG CGGCCAAGCC CGACAGCCAG
GATATCTGCT TCGTCCCCGA CGGCGATTAT GCCAGCATCG TCAAGCGCTT GCGCCCCGAA
GCGGCGGAGG AGGGCGAGAT CGTCGGCCTC GACGGCCGGG TGCTCGGCCG GCATCGCGGG
CTGATCCATT TCACCGTCGG CCAGCGCCGC GGGATCGAGA TCGGCGGCAG CCCAGAGCCG
CTCTACGTCG TCCGGCTGGA GCCGGAGACG AAGCGTCTCG TCGTCGGCCC GCGCCGCGCG
CTCGCCGTGT CGGCGGCGAT GCTCGACGAC GTCAACTGGA TCGGCGAGGG CTATGAGGGG
CCGCTGACCG CCAAGGTCCG CTCGCTCGCC AAGCCGGTCC CGGCCCGGTT CGAGGACGGC
GCCGTCCGCT TCGACCAGCC CGAATATGGC GTCGCCCCCG GACAGGCGGC GGTGCTCTAC
GCGGGCGACC GCGTGCTCGG CGGCGGCTGG ATCCGCGCGA CCGTCCCGGC CGAGCTTGCC
GTAGCGGCCT GA
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| Protein sequence | MLAGPVAVAR EPRGRRLRLV AGEQGAQRGE VERRLGRLGA VDPELVDVDF HRVPRCCPVS
AQETASRGKS LGENRIILRA LARPAMGAPM NPEFQLEGRA PGSLAGARIV VAMSGGVDSS
VVAALAAASG AETIGVTLQL YDHGAAVGRT GSCCAGQDIR DARAVADRLG IAHYVFDYES
RFRDSVIADF ADEYAAGRTP IPCVRCNQGV KFTDLFGIAR DLGADCLATG HYVRRVVGAG
GRAELHRAAD PARDQSYFLF ATTRDQLDYL RFPLGAMPKP RVREIAAELG LGVAAKPDSQ
DICFVPDGDY ASIVKRLRPE AAEEGEIVGL DGRVLGRHRG LIHFTVGQRR GIEIGGSPEP
LYVVRLEPET KRLVVGPRRA LAVSAAMLDD VNWIGEGYEG PLTAKVRSLA KPVPARFEDG
AVRFDQPEYG VAPGQAAVLY AGDRVLGGGW IRATVPAELA VAA
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