| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4727 |
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| Symbol | |
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| ID | 5198369 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 5197020 |
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| End bp | 5199146 |
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| Gene Length | 2127 bp |
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| Protein Length | 708 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640584282 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_001265202 |
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| Protein GI | 148557620 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.254208 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGACCG AATCCCAGGC CGCCGAGCGG CTCGCCTTCC TCGCCGCCGA GATCGCCCGG
CACAATGCGC TCTACCATGG CGAGGACGCG CCCGAGATCA GCGACGCCGA CTATGACGCG
CTGATGCGCG AGAACGCCGC GCTGGAAGCC GAGTATCCGC ATCTGGTGCG CGCCGATTCG
CCGTCGAAGC TGGTCGGCGC CGCCCCGTCG GGGCATCTCG CCAAGGTCGC GCATGCGCAA
CCGATGCTCA GCCTCGACAA CGCCTTCGCC GATGAGGACG TGGTCGACTT CGTCGGCCGG
GTGCGCCGCT ATCTGAGCCT CGGCGCCGAG GAGCCGGTGG CGCTGACCGC CGAGCCCAAG
ATCGACGGCC TGTCCTGCTC GCTGCGCTAC GAGAAGGGCG TGCTGGTGCT CGCCGCGACG
CGCGGCGACG GCACGACCGG CGAGGACGTC ACCGCCAACG TCCGCACCAT CGACGACATC
CCCGAGCGGC TGCGCGGCGG CGACCTGCTG TCGAGCCCGC CCGATGTGTT CGAGATTCGC
GGCGAGGTCT ACATGGCCAA GGCCGACTTC GCCGCGCTCA ACGCCCGCCT GCTGGCGGAG
GCCGAGGACC CGGCCAAGGC GCGCCAGTTC GCCAATCCGC GCAACGCCGC CGCCGGATCG
CTGCGCCAGA AGGACCCGGG CGTCACCGCC TCGCGCCCCC TGCGCTTCCT GGCGCATGGC
TGGGGCGAGG TATCGGCGCT ACCCGCCGAC ACCCAGAAGG GCGTGATGGA CGCGATCGCC
GCCTGGGGCC TGCCGGTGTC CGACGATTTC GTCCGGGTCG ACGGCGCCGC GCAGGCGCTG
TCGCATTACC GCGCGATCGA GGCGAAGCGC GCCGACCTGC CGTTCGACAT CGACGGGGTC
GTCTACAAGG TCGACCGGCT CGACTGGCAG AAAAGGCTGG GCTTCGTCGC GCGCGCGCCG
CGCTGGGCGA TCGCGCACAA ATTCCCGGCC GAAAAGGCCC AGACCCTGCT CAAGGACATC
GACATACAGG TCGGCCGCAC CGGCAAGCTG ACCCCGGTCG CGCGGCTCGA GCCGGTCACG
GTCGGCGGCG TCGTCGTCAC CAACGCCACG CTCCACAATG CCGACGAGAT CGGCCGGCTC
GACGTGCACC CTGGCGACCG GGTGGTGGTG CAGCGCGCGG GCGACGTCAT CCCGCAGATC
GTCGAGAATC TGTCGCGCGA CGAGACGCGC GATCCCTGGC CCTTCCCACA GACCTGCCCC
GAATGCGGAT CGGCGGCCGA GCGCGAGCCG GGCGAGGTCG ACTATCGCTG CACCGGCGGC
CTGATCTGCC CGGCGCAGCG GGTCGAGCGG CTGCGCCATT TCGTGTCGCG CCACGCGCTC
GACATCGAGG GGCTCGGCCT CACCCATATC GAGAGCTTCT TCCGCGACGG GCTGGTCCAG
TCGCCGGCCG ACATCTTCCG GCTGACCAAG GACATATTGC TGACCCGCGA GCGCTGGGCC
GAGGTCTCGG CGGGCAACCT GATCGCGGCG ATCGACGCCA AGCGCCATCC GCCGCTCGAC
CGCTTCCTGT TCGCGCTCGG CATCCGCCAT GTCGGCGAGG TGACGGCGCG CGACCTCGCC
CGCCGCTACC GGAGCTGGGA GGGCCTCAAG GCGATGATCG ACCGGACGAT CGAGGCGCGC
GACGCCGCCG TCCAGGCGAT CGGCGAGACC GACGAGAAAT TCGCCGCCCG CACCGCCAAG
GAGCTCGCCG CGATCGTCGA GACGCCCGGC GTCGGACCGG AGGTCGCGCT GGCGCTGGTC
GACTTCTTCG CCGAGCCGCA CAATGCCGAT GCGGTCGCCG ACCTGCTGAG CCAGCTCCAG
CCCGCCGACG TGATCCACGA AACGCGCGCG TCGGAGGTCA GCGGCAAGAC GGTGGTGTTC
ACCGGCACGC TGGAGACGAT GTCGCGCGAC GAGGCCAAGG CGCAGGCCGA GGCGCTCGGC
GCCAAGGTGG CGGGATCGGT GTCGGCCAAG ACCGACCTGG TGGTCGCGGG CCCCGGCGCG
GGATCGAAGC TCAAGAAGGC GAGCGACCTG GGCATCGCCG TCACCGACGA GGCCGGCTGG
GCGAAGATCG TCGCCGACGC GCAATGA
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| Protein sequence | MTTESQAAER LAFLAAEIAR HNALYHGEDA PEISDADYDA LMRENAALEA EYPHLVRADS
PSKLVGAAPS GHLAKVAHAQ PMLSLDNAFA DEDVVDFVGR VRRYLSLGAE EPVALTAEPK
IDGLSCSLRY EKGVLVLAAT RGDGTTGEDV TANVRTIDDI PERLRGGDLL SSPPDVFEIR
GEVYMAKADF AALNARLLAE AEDPAKARQF ANPRNAAAGS LRQKDPGVTA SRPLRFLAHG
WGEVSALPAD TQKGVMDAIA AWGLPVSDDF VRVDGAAQAL SHYRAIEAKR ADLPFDIDGV
VYKVDRLDWQ KRLGFVARAP RWAIAHKFPA EKAQTLLKDI DIQVGRTGKL TPVARLEPVT
VGGVVVTNAT LHNADEIGRL DVHPGDRVVV QRAGDVIPQI VENLSRDETR DPWPFPQTCP
ECGSAAEREP GEVDYRCTGG LICPAQRVER LRHFVSRHAL DIEGLGLTHI ESFFRDGLVQ
SPADIFRLTK DILLTRERWA EVSAGNLIAA IDAKRHPPLD RFLFALGIRH VGEVTARDLA
RRYRSWEGLK AMIDRTIEAR DAAVQAIGET DEKFAARTAK ELAAIVETPG VGPEVALALV
DFFAEPHNAD AVADLLSQLQ PADVIHETRA SEVSGKTVVF TGTLETMSRD EAKAQAEALG
AKVAGSVSAK TDLVVAGPGA GSKLKKASDL GIAVTDEAGW AKIVADAQ
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