Gene Swit_4702 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_4702 
Symbol 
ID5199096 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp5172349 
End bp5173743 
Gene Length1395 bp 
Protein Length464 aa 
Translation table11 
GC content68% 
IMG OID640584256 
Productdiguanylate cyclase with PAS/PAC sensor 
Protein accessionYP_001265177 
Protein GI148557595 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.781083 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGCAAC TTTCTTCCCA TAGGGACTGG TCCAAGGAAC TGCTCGCCGT GCAATCGGCG 
ATCGCCGCCA CGCCGGGCGA CATCGACCAG GTGATGGACC TGATCGTCGT GGGCGCCCTG
CGGACCATCC CCCACGCCGC CGGCGCGCTC GTCGAGATGC GCGACCGGAA CGAAGGCGAA
TTCCGCGCCG CCAGCGGCAT GGCCGCCCCG TTTGTCGGCG CGCGCGAGCG TTTCAGCGGC
ACCCTGTTCG AGCAATGCGT ACTGTCGCGC CGGGTCCATC ATTGCCCCGA TACGCAGGAC
GATCCGCTGG TCGACGCCGA AAGCTGCCGC GCGCTCGGCA TCGGTTCGAT CCTGCTGGCG
CCGGTCGTCC ATGAAGGCGC GGTGGTCGGC GTGCTCAAGC TCTACGGGCC GCGCGCAAGA
ATCTTCGACG AACAGGACAT GCTGATCGCC CAGCTTCTCG CCGGGCTGAT CACCACCGGC
CTCGCCCGGA TGGACCGCCG CGACGCGCAC AGCGAGCTCG ACCGGATGGC GACGCGCTTC
AAGGCGACGT TCGACCAGGC CGCGGTCGGC ATCGCCCATG TCGCGCCCGA CGGCCGCTTC
CTGCTGGTCA ACGACCGCTT CTGCACGATC GCGGGCCATT CGCGCGAGGC GCTGATGCAG
GGCGGCTTCC AGCAGATCAC CCACAGCGCC GACCTCGACA GCGATCTCGA CAATGTCCAC
CAGCTCGTGG CGGGGGACAT CGTCTCCTAC GTCATGGAGA AACGCTATGT CCGCGCCGAC
CGGCAGATCG TCTGGGTCAA CCTGACCGTC TCGCTGGTCC GCAACGGCGT CGGCCATCCC
GACTTCTTCG TCGCGGTGGT CGAGGACATC ACCCGCCGCA AGATGGCCGA GGAACGCGCG
CTGCACGATC CGCTGACCGG CCTGCCCAAC CGGCGCTGGC TGGCCGAGCA TTTCGGCAGC
TTCTTCGGCG GGATGCCACG CGAGAGCGTG ATCGCCTATC TCGACCTCGA CGGGTTCAAG
GCGGTCAACG ACCGCTTCGG CCATGCCGAG GGCGACCGTT GCCTGAGCGA CGTCGCGAGC
AGCCTCGAAC GGGTGCTGCG CGACCGCGAT TCGATCTGCC GCATCGCCGG CGACGAGTTC
GTGATCCTGA TGCCCGACAC CGACCATGCG ACGGCGCTGG GCCTGATCGG CGAGTTCCGC
AGCGCGGTGC GCAAGCTGTG CCGGGAGCGG CCGTGGAAGA TCGGCATCAG CACCGGCGCG
GTGATGATCG ACGCGCAGCA GTTCGCCAGC CTCGACGACG TCCTCGAAGC GGCCGACCGG
CTGATGTACC GGGCCAAGAA GGAACCCGGC ATCGCCCCGA TCATCTGCAA CATCCGCGAC
GTGCTGGCGG CGTGA
 
Protein sequence
MAQLSSHRDW SKELLAVQSA IAATPGDIDQ VMDLIVVGAL RTIPHAAGAL VEMRDRNEGE 
FRAASGMAAP FVGARERFSG TLFEQCVLSR RVHHCPDTQD DPLVDAESCR ALGIGSILLA
PVVHEGAVVG VLKLYGPRAR IFDEQDMLIA QLLAGLITTG LARMDRRDAH SELDRMATRF
KATFDQAAVG IAHVAPDGRF LLVNDRFCTI AGHSREALMQ GGFQQITHSA DLDSDLDNVH
QLVAGDIVSY VMEKRYVRAD RQIVWVNLTV SLVRNGVGHP DFFVAVVEDI TRRKMAEERA
LHDPLTGLPN RRWLAEHFGS FFGGMPRESV IAYLDLDGFK AVNDRFGHAE GDRCLSDVAS
SLERVLRDRD SICRIAGDEF VILMPDTDHA TALGLIGEFR SAVRKLCRER PWKIGISTGA
VMIDAQQFAS LDDVLEAADR LMYRAKKEPG IAPIICNIRD VLAA