Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4702 |
Symbol | |
ID | 5199096 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 5172349 |
End bp | 5173743 |
Gene Length | 1395 bp |
Protein Length | 464 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640584256 |
Product | diguanylate cyclase with PAS/PAC sensor |
Protein accession | YP_001265177 |
Protein GI | 148557595 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 0.781083 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGCAAC TTTCTTCCCA TAGGGACTGG TCCAAGGAAC TGCTCGCCGT GCAATCGGCG ATCGCCGCCA CGCCGGGCGA CATCGACCAG GTGATGGACC TGATCGTCGT GGGCGCCCTG CGGACCATCC CCCACGCCGC CGGCGCGCTC GTCGAGATGC GCGACCGGAA CGAAGGCGAA TTCCGCGCCG CCAGCGGCAT GGCCGCCCCG TTTGTCGGCG CGCGCGAGCG TTTCAGCGGC ACCCTGTTCG AGCAATGCGT ACTGTCGCGC CGGGTCCATC ATTGCCCCGA TACGCAGGAC GATCCGCTGG TCGACGCCGA AAGCTGCCGC GCGCTCGGCA TCGGTTCGAT CCTGCTGGCG CCGGTCGTCC ATGAAGGCGC GGTGGTCGGC GTGCTCAAGC TCTACGGGCC GCGCGCAAGA ATCTTCGACG AACAGGACAT GCTGATCGCC CAGCTTCTCG CCGGGCTGAT CACCACCGGC CTCGCCCGGA TGGACCGCCG CGACGCGCAC AGCGAGCTCG ACCGGATGGC GACGCGCTTC AAGGCGACGT TCGACCAGGC CGCGGTCGGC ATCGCCCATG TCGCGCCCGA CGGCCGCTTC CTGCTGGTCA ACGACCGCTT CTGCACGATC GCGGGCCATT CGCGCGAGGC GCTGATGCAG GGCGGCTTCC AGCAGATCAC CCACAGCGCC GACCTCGACA GCGATCTCGA CAATGTCCAC CAGCTCGTGG CGGGGGACAT CGTCTCCTAC GTCATGGAGA AACGCTATGT CCGCGCCGAC CGGCAGATCG TCTGGGTCAA CCTGACCGTC TCGCTGGTCC GCAACGGCGT CGGCCATCCC GACTTCTTCG TCGCGGTGGT CGAGGACATC ACCCGCCGCA AGATGGCCGA GGAACGCGCG CTGCACGATC CGCTGACCGG CCTGCCCAAC CGGCGCTGGC TGGCCGAGCA TTTCGGCAGC TTCTTCGGCG GGATGCCACG CGAGAGCGTG ATCGCCTATC TCGACCTCGA CGGGTTCAAG GCGGTCAACG ACCGCTTCGG CCATGCCGAG GGCGACCGTT GCCTGAGCGA CGTCGCGAGC AGCCTCGAAC GGGTGCTGCG CGACCGCGAT TCGATCTGCC GCATCGCCGG CGACGAGTTC GTGATCCTGA TGCCCGACAC CGACCATGCG ACGGCGCTGG GCCTGATCGG CGAGTTCCGC AGCGCGGTGC GCAAGCTGTG CCGGGAGCGG CCGTGGAAGA TCGGCATCAG CACCGGCGCG GTGATGATCG ACGCGCAGCA GTTCGCCAGC CTCGACGACG TCCTCGAAGC GGCCGACCGG CTGATGTACC GGGCCAAGAA GGAACCCGGC ATCGCCCCGA TCATCTGCAA CATCCGCGAC GTGCTGGCGG CGTGA
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Protein sequence | MAQLSSHRDW SKELLAVQSA IAATPGDIDQ VMDLIVVGAL RTIPHAAGAL VEMRDRNEGE FRAASGMAAP FVGARERFSG TLFEQCVLSR RVHHCPDTQD DPLVDAESCR ALGIGSILLA PVVHEGAVVG VLKLYGPRAR IFDEQDMLIA QLLAGLITTG LARMDRRDAH SELDRMATRF KATFDQAAVG IAHVAPDGRF LLVNDRFCTI AGHSREALMQ GGFQQITHSA DLDSDLDNVH QLVAGDIVSY VMEKRYVRAD RQIVWVNLTV SLVRNGVGHP DFFVAVVEDI TRRKMAEERA LHDPLTGLPN RRWLAEHFGS FFGGMPRESV IAYLDLDGFK AVNDRFGHAE GDRCLSDVAS SLERVLRDRD SICRIAGDEF VILMPDTDHA TALGLIGEFR SAVRKLCRER PWKIGISTGA VMIDAQQFAS LDDVLEAADR LMYRAKKEPG IAPIICNIRD VLAA
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