Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4656 |
Symbol | |
ID | 5198461 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 5122988 |
End bp | 5124841 |
Gene Length | 1854 bp |
Protein Length | 617 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640584210 |
Product | dihydroxy-acid dehydratase |
Protein accession | YP_001265131 |
Protein GI | 148557549 |
COG category | [E] Amino acid transport and metabolism [G] Carbohydrate transport and metabolism |
COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.972576 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCGCTT ATCGTTCCCG CACCAGCACC CATGGCCGCA ACATGGCGGG CGCGCGCGGC CTGTGGCGCG CCACCGGCAT GACCGACGAG GATTTCGGCA AGCCGATCAT CGCGATCGCC AACAGCTTCA CCCAGTTCGT GCCGGGCCAT GTCCACCTCA AGGACCTCGG CCAGCTGGTC GCGCGGGAGA TCGAGGCGGC GGGCGGCGTC GCCAAGGAAT TCAACACGAT CGCGGTCGAC GACGGCATCG CCATGGGCCA TGACGGCATG CTCTATTCGC TGCCCAGCCG CGACCTGATC GCCGACAGCG TCGAATATAT GGTCAACGCG CATTGCGCCG ACGCGCTGCT CTGCATCTCC AACTGCGACA AGATCACGCC GGGCATGCTG ATGGCGGCGA TGCGCCTCAA CATCCCCGTC ATCTTCGTAT CGGGCGGGCC GATGGAGGCC GGCAAGGTCG ACATTCGCGG CCAGACCCTC GCGGTCGACC TGATCGACGC GATGATCGTC GCGGCCGACG AGAGCTACAC CGACGAGGAG GTGAAGGTGA TCGAGCGGTC GGCCTGCCCG ACCTGCGGCT CCTGCTCGGG CATGTTCACC GCCAACAGCA TGAACTGCCT GACCGAGGCG CTGGGCCTGT CGCTGCCCGG CAACGGATCG GTCCTCGCCA CCCATGCCGA CCGCGAGAAG CTGTTCCGCG AGGCCGGGCA CACGATCGTC GACCTCGCCC GCCGCTGGTA CGAGCAGGAG GACGCCACCG CCCTGCCGCG CAGCATCGCC AGCTTCGCCG CCTTCGAGAA TGCGATGAGC CTCGACATCG CGATGGGCGG ATCGACCAAC ACCGTGCTCC ACCTGCTCGC CGCCGCGCAT GAGGGCGAAG TGCCCTTCAC CATGGCCGAT ATCGACCGGC TGTCGCGCCG CGTCCCCTGC CTGTGCAAGG TCGCGCCCGC CAAGCAGGAC GTCCACATGG AGGACGTCCA CCGCGCCGGC GGGATCATGG CGATCCTCGG CCAACTCGAC AAGGCCGGGC TGATCGACGC CGGCCTGCCG ACCGTCCACG CGCCGACGCT GGGCGCGGCG CTCGACCGCT GGGACGTCAG CCGCACCGAG AGCGAGAGCG TGCGCGACTT CTACAAGGCC GCCCCCGGCG GCGTGCGCAC CACGGTGGCG TTCAGCCAGA ACAACCGCTG GAAGGAGCTC GACCTCGACC GCGAGGCGGG CGTGATCCGC AGCGCGGAGC AGCCCTTCTC CAGGGATGGC GGCCTCGCCG TGCTGTTCGG CAACCTCGCC CCCGAGGGCT GCATCGTCAA GACGGCGGGC GTCGACGAGA GCGTGCTGAC CTTCCACGGC ACCGCGCGCG TCTATGAGAG CCAGGACGCG GCGGTGGCCG GCATCCTCGG CAACGAGGTG AAGGCGGGCG ACGTGGTGGT GATCCGCTAT GAGGGGCCGA AGGGCGGACC GGGCATGCAG GAGATGCTCT ACCCGACCAG CTATCTGAAG TCGAAAGGCC TGGGCAAGGC CTGCGCGCTG ATCACCGACG GCCGCTTCTC GGGCGGCACG TCGGGCCTGT CGATCGGCCA TGTCTCGCCC GAGGCGGCCG AGGGCGGCCT GATCGCGCTG GTCCAGACCG GCGACCCGAT CCTGATCGAC ATCCCCAATC GCGGCATCCG CCTCGACGTC GACGACGCGA CGCTGGCCGC CCGGCAGGAG GAGATGGTCG CGCGCGGCAA GAAGGCGTGG AAGCCGTTCG GCCGCAAGCG CAACGTCTCC CCGGCCCTGC GCGCCTACGC CGCCCTCACC ACCAACGCCG CGCGCGGCGC GGTCCGCGAC GTGAGCCAGG TCGAGGGGGA GTAG
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Protein sequence | MPAYRSRTST HGRNMAGARG LWRATGMTDE DFGKPIIAIA NSFTQFVPGH VHLKDLGQLV AREIEAAGGV AKEFNTIAVD DGIAMGHDGM LYSLPSRDLI ADSVEYMVNA HCADALLCIS NCDKITPGML MAAMRLNIPV IFVSGGPMEA GKVDIRGQTL AVDLIDAMIV AADESYTDEE VKVIERSACP TCGSCSGMFT ANSMNCLTEA LGLSLPGNGS VLATHADREK LFREAGHTIV DLARRWYEQE DATALPRSIA SFAAFENAMS LDIAMGGSTN TVLHLLAAAH EGEVPFTMAD IDRLSRRVPC LCKVAPAKQD VHMEDVHRAG GIMAILGQLD KAGLIDAGLP TVHAPTLGAA LDRWDVSRTE SESVRDFYKA APGGVRTTVA FSQNNRWKEL DLDREAGVIR SAEQPFSRDG GLAVLFGNLA PEGCIVKTAG VDESVLTFHG TARVYESQDA AVAGILGNEV KAGDVVVIRY EGPKGGPGMQ EMLYPTSYLK SKGLGKACAL ITDGRFSGGT SGLSIGHVSP EAAEGGLIAL VQTGDPILID IPNRGIRLDV DDATLAARQE EMVARGKKAW KPFGRKRNVS PALRAYAALT TNAARGAVRD VSQVEGE
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