Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4618 |
Symbol | |
ID | 5198484 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 5082431 |
End bp | 5084632 |
Gene Length | 2202 bp |
Protein Length | 733 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640584173 |
Product | TonB-dependent receptor, plug |
Protein accession | YP_001265094 |
Protein GI | 148557512 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.0845524 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGAGTC GACTTTCAAA ACTGATGGCT TCCGCCGCGA TCGTCATGGG TTCCGCCGGC GGCGCGATGG CGCAGGTCTC CACCACCGAA GCCGGTTTCG AGCCGGGCGA GATCGTCGTC ACCGCGCAGA AGCGGACGCA GAGCGCGCAG GCGATCGGCG TCGCCGTCTC GGCGCTGGGG GCGGACAATC TGGCCGCGCT GGGGCGGCAG GACATATCGG CGCTGGCGGC GCAGGTGCCC GGCCTGCAGG TCAACCAGTA CAGCCCGACG GTGACCGTCT TCAACATCCG CGGCGTGTCG CAGAACGACT TCGCGGACAG CCAGGAGGCG CCGATCGCCT TCTACAATGA CGAGGTCTAT ATCAGCGCGC TCGGCGCGAT CGCCGGCATG ACCTACGACC TCGAACGGGT CGAGGTGCTG CGCGGGCCGC AGGGCACGCT GTTCGGCCGC AACGCCACCG GCGGCCTGAT CCAGATCGTG TCGGCCAAGC CGACCGACCA TCTCGACGGC TTCGTCACCG CCACGGTCGG CAGCTATGGC CAGGTCGCGA CCGAAGGCGC GGTCGGCGGC CCGCTGAGCG ACCGGCTGCG CGCGCGCCTG TCCTTCACCA CCAACCATGG CGGCGGCTAT TTCAAGAACC GGATCGGCCG GGACCTGGGC GCCGCGAAAT TCTATGCCGG TCGCATCCAG CTTGCCGGGG ATGTCGGCGA GGGCGGCAAG TTCAACATCA AGGTGCAGGC CCTGCGCAAC GACCGCGATC GTCAGGCGGG CATATATTCC CATCGCTCCG CCTTCCCGAA CGCGCTGGGC CTGGGCGTCT ATTTCGACCC GTCCGAAAAC GCCTGGGGCA ATTGCAACGG CTGCGATGCC CTGGGCTATG CGGAGCCCGA TCGCGATCCC TTCACCGGAG CGCTCAACGG GCCGAACTAT TTCAGCCGCA CCTTCTGGGC CGTCACCGCG CGCTACGAAC AGGATCTGGG CGGCGCGACG CTGACCTCGA TCACCGACTA TCAGGACCTG CGCAAGCGCT ATGGCGAGGA CAGCGACATG TCCCCCGCCA CCAACTTCGT CTACACGACG GCGCAGGACC TCTATCAGCT TTCCCAGGAA TTGCGGCTGT CGGGGGAGGG CGACCGGCTC ACCTGGCTTG CCGGCCTCTA CGGCATCAAG ATCCACACGA AGAACGGCTA TGTCACCGAC ACGACCGGCG CCTTCGGCCT GCTCGAGCGA TATGACAGCG TCCTGAACAC CGAGTCCGTC GCCGCCTTCG GCCAGCTCGA ATATAAGCTG GACGACCGGT TCACCCTGAT CGGCGGCCTG CGCTATTCGC GCGACTGGAA ACGGTTCGAT TATGTGCATT CCGAGAATGG CGTGCAGGAC TTCGCGTTCG ACAGAAGGCT GTTTCCCGAT CTCGCGAAGC GGCGCTTCAG TGATTATTCG GGCAAGATCG AGCTCGATTT CAAGCCGAGC CGGAACGCCT TCCTTTATGC CAGCGTCAAT CGCGGCACCA AGAGCGGCGG CTTCGGCACC CAGGCCTTCG GACCCTTCGA TCCGGCGACG ATCGCCTTCG ATGGAGAGGT TTTGACCAAT GTCGAAGGCG GCGTGAAGCT CACGCTGTTG AACCGGACGA CGAACTTCAA CGTCGCCGGC TTCCACTACA AATATAGCGG CTACCAATCG TTCGAACTGG TCGGCGTCAC CCAGATCATC CGCAACAAGC CCGCTCGCAT AAAGGGGCTC GAATTCGAGT TCACGACCCG TCCGGTTGCC GGCCTCTATC TCCAGGCGTT CCTGACCCTG CTCGACGGCG AGGTCCGCAA TGTCACGGTT CCCTCGGGCG ATGTCCTCGA TCGGGACATG CCGCAGGCGC CCTCGCTCAG CGCGGGCGGC CTGATCCGCT ACGAATTCGC GGCGGGGCCG GGGCGGCTGG CGCTCCAGAC CAACTGGAAG CATGACAGCC GGCAATATTT CTCGACCTTC AACGCCCCGG TCGATCGCGA GCCGGCCCGC TGGGTCGGCG ATGCGCGCGT CTCCTATGCC TTCGACGACC TGCCGATCGA GGCCGCCTTC TTCGTCAACA ACCTGACCGA CCGGAAATAC CGGCTCTACA CGCTCGATCT GTCGGGGCCC TTCGGCTTCA CCCAGCAGAA CTACGCCCGC CCGCGCTGGT TTGGCGGCAG CCTCACCTAC CGCATCCAAT GA
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Protein sequence | MASRLSKLMA SAAIVMGSAG GAMAQVSTTE AGFEPGEIVV TAQKRTQSAQ AIGVAVSALG ADNLAALGRQ DISALAAQVP GLQVNQYSPT VTVFNIRGVS QNDFADSQEA PIAFYNDEVY ISALGAIAGM TYDLERVEVL RGPQGTLFGR NATGGLIQIV SAKPTDHLDG FVTATVGSYG QVATEGAVGG PLSDRLRARL SFTTNHGGGY FKNRIGRDLG AAKFYAGRIQ LAGDVGEGGK FNIKVQALRN DRDRQAGIYS HRSAFPNALG LGVYFDPSEN AWGNCNGCDA LGYAEPDRDP FTGALNGPNY FSRTFWAVTA RYEQDLGGAT LTSITDYQDL RKRYGEDSDM SPATNFVYTT AQDLYQLSQE LRLSGEGDRL TWLAGLYGIK IHTKNGYVTD TTGAFGLLER YDSVLNTESV AAFGQLEYKL DDRFTLIGGL RYSRDWKRFD YVHSENGVQD FAFDRRLFPD LAKRRFSDYS GKIELDFKPS RNAFLYASVN RGTKSGGFGT QAFGPFDPAT IAFDGEVLTN VEGGVKLTLL NRTTNFNVAG FHYKYSGYQS FELVGVTQII RNKPARIKGL EFEFTTRPVA GLYLQAFLTL LDGEVRNVTV PSGDVLDRDM PQAPSLSAGG LIRYEFAAGP GRLALQTNWK HDSRQYFSTF NAPVDREPAR WVGDARVSYA FDDLPIEAAF FVNNLTDRKY RLYTLDLSGP FGFTQQNYAR PRWFGGSLTY RIQ
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