| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4612 |
|---|
| Symbol | |
|---|
| ID | 5199082 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 5071640 |
|---|
| End bp | 5073673 |
|---|
| Gene Length | 2034 bp |
|---|
| Protein Length | 677 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640584167 |
|---|
| Product | beta-lactamase |
|---|
| Protein accession | YP_001265088 |
|---|
| Protein GI | 148557506 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAGAC TATCTTCGCA GCGCCCGGAC GTGCCGGGCC GCCTCGGCCG CCTGTTCCGG
CGGGCCGCGG TCCTGCTGGC CGCGCTGGCG CTGCCGGCGG CGGCGCAGTC GCCGACCGAT
CCCAACCCGG CGCACGCGAT CGTTCCCGCC GCCACAGGCC GGACCGGGGA CACGCCGGTC
CTCGCCGGAC AGGCGCAGCG GGCGCTGACG GCGGCCGACG TCGATGCCTG GCTCGACGGT
TTCGTACCCT ATTCGATCGA GGCCGGCGGG GTCGCGGGCG CGGTCGTCGT GGTCGTCAAG
GACGGGAAGC TGCTCACCGC GCGGAGCTAC GGATATTCGG ACGTCCGCGC GCGCAAGCCG
GTCGATCCGG CCAGGACGCT GTTCCGCCCG GGCTCGATTT CCAAGCTGTT CACCTGGACG
GCAGTGATGC AGCAGGTCCA GGCCGGGAAG ATCGACCTCG ACAAGGACGT CAACGCCTAT
CTCGATTTCC GGATTCCCGA TGCCTTCGGC AAGCCGATCA CGATGCGCCA CCTGATGACG
CACACCGCGG GCTTCGAGGA AACCGCCAAA TATCTGATCG TCGAGAAGGC GGAGCAGAAG
CATTCGCTGG GCCATGTGCT CAAGCGCTGG GTGCCGACCC GCATCTACGC GCCGGGGACG
ATGCCGGCCT ATTCCAACTA TGGCGCGTCG CTGGCGGCCT ATATCGTCGA GCGCGTCTCC
GGCGAGCGGT TCGAGGACTA TGTGCAGCGG CACATCTTCA CGCCGCTGGG CATGCGCCAT
TCGAGCTTCG AGCAGCCTTT GCCGGCCCAC CTCGCACCGC TTCTCTCCAA GGGCTACAAC
CTCGCTTCGG AGGACCCCAA GCCCTTCGAG ATCGTCGAGA TGGCGCCCGC CGGGGCCTTG
TCGTCGACAG GCACCGACAT GGCCCGCTTC ATGCTGGCCT TCCTCGACAA TCGCGGCGCG
CTGATCAGCC CGGAGACCCG CGCCCGGATG TTCGCCGACG TCAACCGGCC GCTCCCGGGC
CTGCCTGCGA TGGGGCTCGG CTTCTATCAT GAGGATCGCA ACGGCGAGGT GATCGTCGGC
CATGGCGGCG ACACGAACTG GTTCCATTCG GACCTGCACC TGATCGTCGA CAAGGGTGTC
GGCGTCTACA TGTCGTTCAA CAGTTCGGGC AAGGACACCG CCGCGCACGT CATCCGCCAG
CGGCTGTTCG AACAGTTCAT GGATCGCTAT TTCCCCGATC CGAACTCCGA GCCGCGCACG
ACGGCGACGG CGCGCGAGCA TGGCCGCCTG ATGGCCGGCC ATTATCTTCT CAGCCGCGGC
TCCGCCACCA ACTGGCTCCG CTTCGTCGGC TTGCTGAGCG AGGCCGAGGT GATCCCGAAC
GACGACGGCA CCATTTCGGT GTCGATGCTC GTCGATCCGG CAGGGGCGCC CAAGCGCTGG
CGGGAGGTCG CCCCCTTCCA GTGGCGTGAG GTCGGCGGCA GCGGCCGGCT GGCCGCCAGG
GTCGAGAACG GCCGGGTGAC CGCCTTCTCG ATCGCGGACT TCGCGCCGAT CTTCCTGTTC
CTCGCGGCGC CCGGCGATCT CGACGCGGGG TGGATCGTCC CGGCTCTCGT CGCCGCGCTC
GGCGTGATGC TGCTGACCGT GCTCGCCTGG CCGGTGGTCG CGGGAATGCG CAAGGTCTAT
GGCTATCGTT CGTCGCTGGC GGGCCGGCCG CTCATGCTCG ACCGCGCGAT GCGGGCGACC
GCGGTGGTCT CGGTCCTGGC GGCGGCAGGC TGGATCGGTA TGGTGGGGGC GATCGAATCC
GACGTCGGGC TGCTCGACGG GCGGCTCGAC ATCTGGATGC GCGTGATCCA GTTGCTCGAG
ATCATCGCCA TCGTCGGGAC GCTGGCTTCG ATCTACAACG CCTATGTGAC CATCGGCGCC
TCCGGCCGAT CGCTGGTCGC GAAGATCTGG TCCGTCGCGG TTCCGCTGGC CGGGCTGTTC
CTCGGCTGGA TCGTGCTCAG CATGGGCCTG CTGACCTTCG GACTCGATTA TTGA
|
|---|
| Protein sequence | MSRLSSQRPD VPGRLGRLFR RAAVLLAALA LPAAAQSPTD PNPAHAIVPA ATGRTGDTPV
LAGQAQRALT AADVDAWLDG FVPYSIEAGG VAGAVVVVVK DGKLLTARSY GYSDVRARKP
VDPARTLFRP GSISKLFTWT AVMQQVQAGK IDLDKDVNAY LDFRIPDAFG KPITMRHLMT
HTAGFEETAK YLIVEKAEQK HSLGHVLKRW VPTRIYAPGT MPAYSNYGAS LAAYIVERVS
GERFEDYVQR HIFTPLGMRH SSFEQPLPAH LAPLLSKGYN LASEDPKPFE IVEMAPAGAL
SSTGTDMARF MLAFLDNRGA LISPETRARM FADVNRPLPG LPAMGLGFYH EDRNGEVIVG
HGGDTNWFHS DLHLIVDKGV GVYMSFNSSG KDTAAHVIRQ RLFEQFMDRY FPDPNSEPRT
TATAREHGRL MAGHYLLSRG SATNWLRFVG LLSEAEVIPN DDGTISVSML VDPAGAPKRW
REVAPFQWRE VGGSGRLAAR VENGRVTAFS IADFAPIFLF LAAPGDLDAG WIVPALVAAL
GVMLLTVLAW PVVAGMRKVY GYRSSLAGRP LMLDRAMRAT AVVSVLAAAG WIGMVGAIES
DVGLLDGRLD IWMRVIQLLE IIAIVGTLAS IYNAYVTIGA SGRSLVAKIW SVAVPLAGLF
LGWIVLSMGL LTFGLDY
|
|---|
| |