Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4611 |
Symbol | |
ID | 5199081 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 5069286 |
End bp | 5071640 |
Gene Length | 2355 bp |
Protein Length | 784 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640584166 |
Product | TonB-dependent receptor, plug |
Protein accession | YP_001265087 |
Protein GI | 148557505 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGATAA GGCTGAAGGC ATTCTGCCTG GCGGGCGCGG CGCTGGTCGC GGTCGCGCCG GCGGCGGCCC AGCGGTCGGG GGCGGCCGAT GCGACGGCGC CGGGGGCGGA CGATCGGATC GACGAGATCG TCGTGACCGC GCAGAAGCGC GAGGAGCGGC TGCTCGACGT TCCCCAGTCG ATCTCGGTGG TGTCCAGCGC GACGCTCGAG CGGCAGCAGA TCAGGAGCAT CGCCGATTAT GCTTCGCTGG TTCCCGGTCT CACCATCCAG CAGCAGACGC CGGGGCAGGC CCGCGTCGTC CTGCGCGGCA TCAACACCGG CGGGGCGAGC CCGACCGTCG CCATCTATGT CGACGACACG CCGTTCGGGT CGAGCACCGG CCAGAGCAAC GCGGCCTATC TGGCGGGCGA CATCGATACG TTCGACGTCG AGCGGATCGA GGTGCTGCGC GGGCCGCAGG GTACGCTCTA CGGCGCCAAT TCGCTGGGCG GCGTCGTCAA ATATGTCACC GCCGGCCCCA AGCTCGACCG GCTCGAAGGG AAGGCCCAGG CCGGTCTCGA AACGGTCAAG GGCGGGAATC TGGGCTGGTC GGCCAACGCC GCGGTCAACG TGCCGCTGTC CGGCAAGATC GCCGTGCGGG CGAGCGGCTT CTATCGCCGG ACCGGCGGCT TCATCGACAC GCTGGGCCTG GCGCGCCGCG ACGCCAACGA CGTCGACAGC TATGGCGGCC GCGGCTCGAT CCTGCTGCAG CCGACCGAGA CGCTGACGGT CCGCCTGTCG GCGCTCGCCC AGAATCTGCG CAGCGATTCG CGCGCCATGT ACGATGCCGA TCCGGTCACG CTGGCGCCCC AGGCGACCGA TCCCAGCACC GGCGCGCCGG TGTCGGGCCT GACCCGCACC GAATTCTATG CCGAGAAGAC CGGCGTCGAC TATCGCCTCT ACAACGGCAC GCTCGACTGG GACGCGGGGT TCGCCACCCT GACCTCGGTG ACGAGCTACG GCCGGCTCTT CTCGAACGAC GTCGGCGACG TCAGCTATCA GCTTCCCGGC ATCGGCGACG CGGTCTTCGG CACCGGGCCC AACACGCGCG GCCTGTTCTT CCCGACGCAG ATCACCCAGA AGAAGTTCAC CCAGGAACTG CGCCTGGCAT CGCCGGACAA TGATCGGCTC GAATGGCTGG TCGGCGGCTA TTACACGCAT GAGAAGGGCC GGATATTCCA ACGATATCTG CCCTTCGACC TCGCCACCGG CAAAGCCGTC GACCAGACGC TCGTCCTGCC GGTGGGGCCG GGCGGCGCGG ACGTCACCTT TCCCGATTTC CTGGTCGCGA ACCTTGCCTC GGTCTACAAG GAATATGCCG GCTTCGGCAG CGCCACCTGG CATGTCGGCC CGCGCCTCGA CCTGACCGGC GGCGTCCGCT ACAGCCATAA CCGGCAGAGC ACGGTCCAGA GCCTCGACGG GTCCTTCCTG CCGCTTTCGG GCGCGCCGAT CGGGCCCGAC ACGAGCCGCG GGCGATCGTC GGAGAATGTC TTCACCTGGT CGGTCTCGCC GCGTTTCGAA CTGGGCGACC ATGCATCGAT CTATGCGCGG GCGGCGAAGG GCTATCGGCC GGGCGGCCCG AACGTCGTGC CGCCGGGGGC TGGACCGGAC TTCCCGCGCC GGTTCGAGGC CGATACGCTG ATCAGCTATG AACTGGGCCT GCGCGCCGAA ACCCCCGGTC ACGGCTTCTC GGTCGACGCG TCGGTCTATT ATCTCGACTG GCGCAACATC CAGACCACGG TCACCTATCA GACCAGCCTC GGCCCGGTGA CCGGCGACGG CAATGGCGAC AAGGCGCGCA GCAAGGGGGC GGAGATCACC GTCACCGCGC GGCCCGCGCG CGGCTTCGAC CTGACGGCGA GCATCGCCTA TAGCGACGCC AAGCTGAAGG ACGACCTGCC CGGCATCGAC ATCGGCGCCC CGGCGCTCAT ATCCCCGGGG CTGAAGGGCG ACCGGCTTCC TTATGCGCCG GAATGGACGG TCGACCTGTC GGGCGACTAT CGCTGGTCGA TCGGCGGCGA CGCCGAGGCC TTCGTCGGCG GCAATATCCG GCTGATCAGC GACCAGGCGA CCGATTTCGA CCTGGCCTAT CGGCTGACCT ATGGCCGCCG CCTGACGATC GACGGCTATG CCACCGCCGA TCTGCGCGCC GGTATCGAGA CCGGACGGTT CAACCTCCAG TTCCAGGTCC GCAACCTCAC CAATTCGCGT GGCCTGATCA ACGCGGGCCG GTTCCAGACA CGGCCGGGCA CGCTGGTCAA CGCCTCTCCG ATCCGGCCAC GCAGCTTCGG CGTCACCTTG GGAGCCTCCT TCTGA
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Protein sequence | MAIRLKAFCL AGAALVAVAP AAAQRSGAAD ATAPGADDRI DEIVVTAQKR EERLLDVPQS ISVVSSATLE RQQIRSIADY ASLVPGLTIQ QQTPGQARVV LRGINTGGAS PTVAIYVDDT PFGSSTGQSN AAYLAGDIDT FDVERIEVLR GPQGTLYGAN SLGGVVKYVT AGPKLDRLEG KAQAGLETVK GGNLGWSANA AVNVPLSGKI AVRASGFYRR TGGFIDTLGL ARRDANDVDS YGGRGSILLQ PTETLTVRLS ALAQNLRSDS RAMYDADPVT LAPQATDPST GAPVSGLTRT EFYAEKTGVD YRLYNGTLDW DAGFATLTSV TSYGRLFSND VGDVSYQLPG IGDAVFGTGP NTRGLFFPTQ ITQKKFTQEL RLASPDNDRL EWLVGGYYTH EKGRIFQRYL PFDLATGKAV DQTLVLPVGP GGADVTFPDF LVANLASVYK EYAGFGSATW HVGPRLDLTG GVRYSHNRQS TVQSLDGSFL PLSGAPIGPD TSRGRSSENV FTWSVSPRFE LGDHASIYAR AAKGYRPGGP NVVPPGAGPD FPRRFEADTL ISYELGLRAE TPGHGFSVDA SVYYLDWRNI QTTVTYQTSL GPVTGDGNGD KARSKGAEIT VTARPARGFD LTASIAYSDA KLKDDLPGID IGAPALISPG LKGDRLPYAP EWTVDLSGDY RWSIGGDAEA FVGGNIRLIS DQATDFDLAY RLTYGRRLTI DGYATADLRA GIETGRFNLQ FQVRNLTNSR GLINAGRFQT RPGTLVNASP IRPRSFGVTL GASF
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