| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4609 |
|---|
| Symbol | |
|---|
| ID | 5199079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 5067249 |
|---|
| End bp | 5068244 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640584164 |
|---|
| Product | mandelate racemase/muconate lactonizing protein |
|---|
| Protein accession | YP_001265085 |
|---|
| Protein GI | 148557503 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.660444 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGGC GGGTCCTGAC CCATAAGCGG ATCGAGAACC GGATGCGCGA GCCTTTCCGG
ATCGCCGGCT ATCAGTTCGA TTCGATGCCT TCGGTCGTCG CCTCGATCGA GCAGGACGGT
GTGGCGGGGC GCGGCGAGGC GGCGGGCGTC TATTATCTCC ACGACGATCC GGCCCATATG
GCCGCCGAGA TCGAGCGGGT CCGCGATGCG ATCGAGGCCG GGGCCGGCCG CGCCGAACTG
CAGGAACTCC TCCCCCCGGG CGGCGCCCGC AATGCCCTCG ACTGCGCGCT CTGGGACCTG
GAGGCGCGGT TGACCGGCCA GCCGGTCTGG CGGATCGCCG GGCTCGACGC CGCGCGTCCG
CTCGTCACGA CATTCACCCT TCCCGCGGAT ACGCCCGAGG AGATCCTCGA CCGGCTCGCC
GGCTTTCCGC CGGTCGAGGC GATCAAACTG AAGCTGGACG GCGACCTGCC GGCCGACATC
GCGCGGATGC GGGCGGTGCG GCGAGCCCGC CCCGATGTGT GGCTGGGGGT CGACGCCAAT
CAGGGCTATT CGGCCGAATC GTTCGAGGCG TTGGCAGCCG CCCTGGTGGA GGCGGGAGTC
GCGCTGCTCG AACAGCCCGT CCGCCGCGGC GAGGAGGCGC AGCTCGACGG CTGGCGCTGC
CCGATCCCCG TCGCCGCCGA CGAGAGCATC CTCGACTGCG TCGAGCTCGA CCGGCATCGC
CATCGCTTCG ACGTCGTCAA CATCAAGCTC GACAAGTGCG GCGGACTGAC CGAGGCGCTG
CGGATGGTCG ACCTCGCCCG ACGGATCGGG GTCAGGCTGA TGGTCGGCAA CATGGCCGGA
TCCAGCCTCG CCATGGCGCC CGCCTTCGTG GTCGGGCAAT ATTGCGAGAT CGTCGATCTG
GACGGCGCAT GGTTCCTGTC GGAAGACACC GTGGCCGCCG CGATGTACGA CGCCGGAACC
TGCCGCGTTC CGCAGGGTTT CTGGGGCGGC CTCTAG
|
|---|
| Protein sequence | MSRRVLTHKR IENRMREPFR IAGYQFDSMP SVVASIEQDG VAGRGEAAGV YYLHDDPAHM
AAEIERVRDA IEAGAGRAEL QELLPPGGAR NALDCALWDL EARLTGQPVW RIAGLDAARP
LVTTFTLPAD TPEEILDRLA GFPPVEAIKL KLDGDLPADI ARMRAVRRAR PDVWLGVDAN
QGYSAESFEA LAAALVEAGV ALLEQPVRRG EEAQLDGWRC PIPVAADESI LDCVELDRHR
HRFDVVNIKL DKCGGLTEAL RMVDLARRIG VRLMVGNMAG SSLAMAPAFV VGQYCEIVDL
DGAWFLSEDT VAAAMYDAGT CRVPQGFWGG L
|
|---|
| |