Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4608 |
Symbol | |
ID | 5199078 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 5065374 |
End bp | 5067026 |
Gene Length | 1653 bp |
Protein Length | 550 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 640584163 |
Product | crotonobetaine/carnitine-CoA ligase |
Protein accession | YP_001265084 |
Protein GI | 148557502 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTGTTC ATGAAGACGC CGCGCAGCCT GTCATGGCGG GTAGCGAGGT TCTTGCCGAT CGATCGATCC CCGCCCTGCT GACGCGGCGG GCGGCGCTGG GCGACAAGCC TCTGGTCATC TTCGGCGACA CGCGCTTCGG CTATGGCGAG ATGGCGGCGC GCGCGGCGGC GGCGGGCGCG CTGCTGCGCG ATGCCGGCGT GGCGCGGGGC GACCGGGTCG CGATCTTCTG CGGCAACCGG ATCGCCTTTC TCGACCTGTT CCTCGGCTGC GCCTGGATCG GCGCGGTGGC GGTGCCGATC AACCATTTCG CGCGCGGGCC GCAACTCCAG CACATATTGG GCAACAGCGG CGCGCGCCTG ATCGCCGCCG ATGCCGACGG CGCCGCCGCG CTCGACCATG TCGATCCCTC CGCGCTGGCG CTGGCCGAGG TCTGGCTGCT CGACGGCGAG AATAGCCCGC CCCCCGCCGC CGGCCATTGG CCCGCGGCCT GGAAGGTCGG CCCGATGCCG CCGCTGGACG CGGGCGCCGA CGCCGCATCG CCGCGCCCCG GCGACATGGC CGCGATCATC TACACATCAG GCACCACCGG CCCCTCCAAG GGGGTCTGCT GCCCGCATGC GCAATTCTAC TGGTGGGGCG CCCATTCGGT CGACCTGCTG GAGATCGAGG CGCGCGACGT GCTGCTGACC ACCCTGCCCC TGTTCCACGT CAACGCGCTC GCCACCTTCT TCTCGGCGCT GCTCAGCGGG GCGACGCTCG TCGTCCTCGA ACGCTTCTCG GCGAGCGGCT TCACCGATGC GCTGCGCAAG CACCGGGCGA CCGTCACCTA TCTGCTCGGC GCGATGGTCT CGATCCTGCA GTCGACCCCG CCGTCCGACC GCGACAACGA CCATCCGACG ACGCGCGCGC TGGCCCCCGG CGTCTCGGCC GCGCTCGCCG CCGACTTCCG CGCGCGCTTC GGCATCGGCG CGGTCGACGG CTATGGATCG ACCGAGACCA ATTTCGTCAT CGGCGACCGG CTGGCCGACC AGAAGCCGGG CAGCATGGGT CGCGTCCGTC CCGGCTTCAC GGCGCGCGTG GTCGACGAGG AGGACAATGA ACTGCCGCCG GGCGTGCCGG GCGAACTGGT CGTGCGCGCC GACGAGCCCT TCGCGATGGC GACCGGCTAT TTCGAGATGG CGTCGGCGAC CGTCGCCGCC TGGCGCAACC TGTGGCTCCA CACCGGCGAC CGCGTCGTCC GCGACGCCGA CGGCCGCTTC ACCTTCATGG ACCGGATCAA GGACGCGATC CGGCGGCGTG GCGAGAACAT CTCCGCCTAT GAGGTCGAGC AGGTGCTGGC GAGCCATCCG GCGGTCGCCC AGGCCGCGGT CTTCCCGGTC CGTTCCGAAC TGACCGAGGA CGAGGTGATG GCGGCGGTGG TGCTGAAAGA AGGGATGGCC CTCGATCCGG TCGCGCTGCT CGATTATTGC AAGCCGCGGA TGAGCTATTT CTCGGTGCCG CGCTATGTGC TGTTCGCGGA CCGGCTGCCG ATGACGGAGA ATGGCAAGGT GCAGAAATAC CGGCTGCGCG AGATCGGGGT GACGCCCGAG ACATGGGACC GGGAGGCGGC CGGCTACACC GTCGGTCGCG GCGGCGGGGC GCGGCGCGCG TGA
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Protein sequence | MPVHEDAAQP VMAGSEVLAD RSIPALLTRR AALGDKPLVI FGDTRFGYGE MAARAAAAGA LLRDAGVARG DRVAIFCGNR IAFLDLFLGC AWIGAVAVPI NHFARGPQLQ HILGNSGARL IAADADGAAA LDHVDPSALA LAEVWLLDGE NSPPPAAGHW PAAWKVGPMP PLDAGADAAS PRPGDMAAII YTSGTTGPSK GVCCPHAQFY WWGAHSVDLL EIEARDVLLT TLPLFHVNAL ATFFSALLSG ATLVVLERFS ASGFTDALRK HRATVTYLLG AMVSILQSTP PSDRDNDHPT TRALAPGVSA ALAADFRARF GIGAVDGYGS TETNFVIGDR LADQKPGSMG RVRPGFTARV VDEEDNELPP GVPGELVVRA DEPFAMATGY FEMASATVAA WRNLWLHTGD RVVRDADGRF TFMDRIKDAI RRRGENISAY EVEQVLASHP AVAQAAVFPV RSELTEDEVM AAVVLKEGMA LDPVALLDYC KPRMSYFSVP RYVLFADRLP MTENGKVQKY RLREIGVTPE TWDREAAGYT VGRGGGARRA
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