| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4563 |
|---|
| Symbol | |
|---|
| ID | 5196588 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 5020258 |
|---|
| End bp | 5023068 |
|---|
| Gene Length | 2811 bp |
|---|
| Protein Length | 936 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640584116 |
|---|
| Product | DNA gyrase subunit A |
|---|
| Protein accession | YP_001265039 |
|---|
| Protein GI | 148557457 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
|---|
| TIGRFAM ID | [TIGR01063] DNA gyrase, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.501446 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGCCC CGTTCCGGGG CCAGAACACC GCTTCAACGA ACACGGACCC AAAGACTTTG
GCCAGCGTAC CGCCGCCCAT CGAAAACAGC GACATTTCCC CGATCTCGAT CATCGACGAG
ATGAAGTCGA GCTATCTCGA CTATGCCATG TCGGTGATCG TGTCGCGCGC CCTTCCCGAC
GTGCGCGACG GGTTGAAGCC GGTGCACCGC CGCATCCTCT ATGCGTGCCA GGAGGGCGGC
TTCGTCCCGG GCCGGCCCTA CCGCAAGTCG GCGAAGATCG TCGGCGACGT GATGGGCAAC
TATCACCCGC ACGGCGACAG CTCGATCTAC GACGCGCTCG CGCGCCTCGC CCAGGATTGG
GCGATGCGGG TGCCGCTGAT CGACGGCCAG GGCAATTTCG GCTCGATGGA CCCCGATCCG
CCGGCGTCGA TGCGCTATAC CGAGGCGCGG CTCGCCAAGG TGGCGATGAC CCTGCTCGAC
GACCTCGACA AGGACACAGT CAACTTCACG CCGAACTATG ACGGCTCGCG CGACGAGCCG
CAGGTGCTGC CGGCGCGCTT CCCGAACATC CTGGTCAACG GCGCCGGCGG CATCGCGGTC
GGCATGGCGA CCAACATCCC GCCCCACAAT CTCGGCGAGG TGATCGCGGC CTGCAAGGCC
TATGTCGACA ATCCCGCGAT CTCGATCGAC GAGCTTATGG CGATCGTGCC CGGCCCGGAC
TTCCCGACCG GCGCGCTGAT CCTCGGCCAG TCGGGCGCGC GGCAGGCCTA TCATACCGGG
CGCGGCTCGA TCATCATGCG CTCGCGCCAC GAGGTCGAGG AAAGCCGCGG CGACCGCCGC
TCGATCGTCC TGACCGAAAT CCCCTACCAG GTCGGCAAGT CGGGCCTGGT CGAGAAGATC
GCCGAGGCGG CGAAGGACAA GCGGATCGAG GGCATCTCCG ACATCCGCGA CGAGTCGAAC
CGCCAGGGCG TCCGCATCGT CATGGACCTG AAGCGCGACG CGACCCCGGA CGTGGTGCTC
AACCAGCTCT GGCGCCACAC CCCGGCGCAG ACCAGCTTCC CGGCCAACAT GCTCGCGATC
CGCGGCGGCC GGCCCGAGAC GCTGAACCTG CGCGACATCG TCGAATCCTT CGTCAAGTTC
CGCGAGGAGG TCATCACCCG CCGCTCGAAG TTCGAGCTGA ACAAAGCGCG CGAGCGGGCG
CATATCTTGC TCGGCCTCGT CATCGCGGTC ACCAACCTCG ACGAGGTGGT GCGGATCATC
CGCCGGTCGG CGAGCCCCGC CGAGGCGCGC GCCGCGCTGA TCTCGCGCGA ATGGCCGCGC
GGCGAGATCG AATCCTACAT CAAGCTGGTC GAGGCGGTCG ACACGATCGG CGACGCGCCG
ACCTACCAGC TCAGCGAGGT CCAGGTCCGC GCGATCCTCG ACCTGCGCCT GCACCGCCTG
ACCGCGCTCG GCCGCGACGA GATCGGCGAC GAACTCGCCA AGCTCGCCGA ATCGATCGCC
GAGCTGCTCG AGATCCTCGG CAACCGGGTC CGCCTCTACC AGGTGATGGT CGAGGAATTC
GACGCGATCC TGGTCGAGTT CGCGACGCCC CGCCGCACCG AGATCGCGCC CGCCGGCGAC
GACATCGACG ACGAGGACCT GATCGAGCGC GAGGACATGG TCGTCACCGT GACCCACGGC
GGCTACATCA AGCGCACCCC GCTCGAAGCC TTCCGCGCGC AGCGCCGCGG CGGCAAGGGC
CGCTCGGGCA TGGCGACCAA GGACGAGGAC GCCGTCACCG AGCTGTTCGT GACGAGCACC
CACACGCCGG TGCTGTTCTT CTCGAACCAC GGCAAGGTCT ATCGCAAGAA GGTGTGGCGC
CTGCCCGAGG GCGCGCCGCA GGCGCGCGGC CGGCCGATGA TCAACCTGCT GCCGCTGGCC
GACGGCGAGA AGATCACCAC CGTCCTGCCG TTACCCGAGG ACGAGGAGAG CTGGAGCACG
CTCCACGTCG TCTTCGCGAC CGCGCATGGC AATGTCCGCC GCAACTCGAT GGACGCCTTC
GCCAATGTGC CGACCAACGG CAAATTCGCG ATGCGCTTCG ACGAGGACGC CACCGACCGG
CTGATCGGCG TCGCGCTGCT GACCGAGCAG GACGACGTCC TGCTCGCGAC CCGCGGCGGC
AAGGCGATCC GCTTCGCCTC CACCGACGTG CGCGAGTTCC AGAGCCGCAC CTCGACCGGC
GTGCGCGGCA TCCTGCTCAA GGGCGACGAC GAGGTGATCT CGCTGTCGAT CCTCAAGGGC
TTCGACGCCT CCACCGATGA GCGCGACGCC TATCTGCGCG CCGCGCCATG GAAGGACAAC
GAGGCCGACC CGACGCTGTC GGCCGAACGC ATGGCCGAGT TCGAGGCCGC CGAGGAGTTC
ATCCTGACGG TCTGCGCCAA CGGCTATGGC AAGCGCAGCT CGGCCTATGA ATATCGCCGG
ACCGGCCGTG GCGGCCAGGG CATCGGCAAT ATCGACAATC TGGAGCGCAA CGGCCCGGTC
GTCGCCAGCT TCCCGGCGCA TAATGGCGAG CAGCTCATGC TCGTCACCGA CCAGGCCAAG
CTGATCCGCC TCTCGGTCGG CGACACCCGC GTCATCGGCC GCAACTCGGC CGGCGTCCGC
CTGTTCAACG TCTCCGACAA CGAGCATGTC GTCGGCGCGG CGCGGATCGA GGAGAGCGAC
GACGAGGCCG AGGCCGACCT GGGCGACGGC ACCGGCGAGA TCGCCCCCGC CGACGACGCG
GTGGTGGGCG AGGACCTGGC CGACGGCGGC GAGGCATCGG GCGACGAATG A
|
|---|
| Protein sequence | MTAPFRGQNT ASTNTDPKTL ASVPPPIENS DISPISIIDE MKSSYLDYAM SVIVSRALPD
VRDGLKPVHR RILYACQEGG FVPGRPYRKS AKIVGDVMGN YHPHGDSSIY DALARLAQDW
AMRVPLIDGQ GNFGSMDPDP PASMRYTEAR LAKVAMTLLD DLDKDTVNFT PNYDGSRDEP
QVLPARFPNI LVNGAGGIAV GMATNIPPHN LGEVIAACKA YVDNPAISID ELMAIVPGPD
FPTGALILGQ SGARQAYHTG RGSIIMRSRH EVEESRGDRR SIVLTEIPYQ VGKSGLVEKI
AEAAKDKRIE GISDIRDESN RQGVRIVMDL KRDATPDVVL NQLWRHTPAQ TSFPANMLAI
RGGRPETLNL RDIVESFVKF REEVITRRSK FELNKARERA HILLGLVIAV TNLDEVVRII
RRSASPAEAR AALISREWPR GEIESYIKLV EAVDTIGDAP TYQLSEVQVR AILDLRLHRL
TALGRDEIGD ELAKLAESIA ELLEILGNRV RLYQVMVEEF DAILVEFATP RRTEIAPAGD
DIDDEDLIER EDMVVTVTHG GYIKRTPLEA FRAQRRGGKG RSGMATKDED AVTELFVTST
HTPVLFFSNH GKVYRKKVWR LPEGAPQARG RPMINLLPLA DGEKITTVLP LPEDEESWST
LHVVFATAHG NVRRNSMDAF ANVPTNGKFA MRFDEDATDR LIGVALLTEQ DDVLLATRGG
KAIRFASTDV REFQSRTSTG VRGILLKGDD EVISLSILKG FDASTDERDA YLRAAPWKDN
EADPTLSAER MAEFEAAEEF ILTVCANGYG KRSSAYEYRR TGRGGQGIGN IDNLERNGPV
VASFPAHNGE QLMLVTDQAK LIRLSVGDTR VIGRNSAGVR LFNVSDNEHV VGAARIEESD
DEAEADLGDG TGEIAPADDA VVGEDLADGG EASGDE
|
|---|
| |