| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4542 |
|---|
| Symbol | |
|---|
| ID | 5200285 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 4995909 |
|---|
| End bp | 4996457 |
|---|
| Gene Length | 549 bp |
|---|
| Protein Length | 182 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640584095 |
|---|
| Product | dTDP-4-dehydrorhamnose 3,5-epimerase |
|---|
| Protein accession | YP_001265018 |
|---|
| Protein GI | 148557436 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes |
|---|
| TIGRFAM ID | [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 0.789157 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.474294 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCTTCC ACGAGACCAC GCTGAAGGAC GCGCGGCTGA TCGAGGTCGA GCCGCGCGGC
GACGAGCGCG GCATGTTCGC GCGGACCTTC TGCCGCCAGG AGTTCGAGGC GCACGGCCTG
CTCACCGACT TCGTCCAGCA GAATATGTCG GTGTCGGCGC AGGCCGGCAC GATCCGCGGC
ATGCATTATC AGCGGCCGCC CTTTACCGAG GCGAAGCTGG TCCGCTGCGT GCGCGGCCGG
ATCCTCGACG TGATCGTCGA CATGCGCAGC GGATCGCCGA CCTATCTGCG ACATGAAGGG
TTCGAACTGT CCGCCGACAA CCGCCGCCAA CTCTATGTGC CGCCCGGCTT CGCGCACAGC
TTCCAGACGC TCGTCGACGA TATCGAGGTC AGCTACCTGG TCACCGCGCC CTACACGCCC
GATGCGGAGG GCGGGGTGCG CTACAGCGAT CCACTGCTCG CGATAAGCTG GCCGCTGCCG
GTCACGACCA TATCCGACAA GGACGCTGGC TGGCCGCTGA TCGACCGGTC GGCGGAACCG
ATATTCTGA
|
|---|
| Protein sequence | MIFHETTLKD ARLIEVEPRG DERGMFARTF CRQEFEAHGL LTDFVQQNMS VSAQAGTIRG
MHYQRPPFTE AKLVRCVRGR ILDVIVDMRS GSPTYLRHEG FELSADNRRQ LYVPPGFAHS
FQTLVDDIEV SYLVTAPYTP DAEGGVRYSD PLLAISWPLP VTTISDKDAG WPLIDRSAEP
IF
|
|---|
| |