| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4533 |
|---|
| Symbol | |
|---|
| ID | 5198591 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 4985053 |
|---|
| End bp | 4985973 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640584086 |
|---|
| Product | glycoside hydrolase family protein |
|---|
| Protein accession | YP_001265009 |
|---|
| Protein GI | 148557427 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2273] Beta-glucanase/Beta-glucan synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.445894 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAATCC ATATCATAAG CGGTATTGCG CTATTCGCCG GTTCGGTTGC GGCTTTTGCA
ATCGGTGCCG CGCCCGACTC GCCGCCGCGC TCCGGGCCGC CGCCCGGCCT CGCCATGCGG
ATGAGCTTCG AGGAGAATTT CGACGGCCGC GCCCTGCGCG ACGACGTCTG GCGCACCGCC
TACAAGACGT GCGGCAAGGC CGGCACGATC GCCAATCGCA GCCTCTACGG CAATCGCGAG
CGGCAGATCT ATTTCGACCG CGACTTCCTG GACGCCGGCG TCCAGCCCTT CGAGGTGCGC
GACGGCAAGC TGACGATCAC CGCGCGGCCG CTGCCGCCGG CGGTGAAGGC GAAGCTCGAC
GGCGCACTGG GGAAGCAGCC CGCGAACATC CGCGGCAGCG CGCTGGCCCA GGCGCGCTAC
AGCTCGGGAC TGATCACCAC CAAGTGCAGT TTCGAGCAGG CCTATGGCTA TTTCGAGATC
CGCGCCCGCT GGACCGGGGG CAAGGGGATC TGGCCCGCCT TCTGGCTGTT GCCGGCCAAG
GGCGGCTGGC CGCCCGAGAT CGATATTCTC GAGGCGCATG GCGACAAGCC GGGCACCGTC
TTCCAGAGCC TGCATTCGAA GCGGCAGAAA TCGATCACCC GCAAGGCGAC GGTGCCGGGG
AGGGCGGACG CCTTCCATCT GTACGCGGTG CTGTGGACGC CCGAGACGCT CGATTATTAT
GTCGACGGCG TCCGCACCGC GTCGATCCCG ACCACCGCCG ACGCGAGCCA GCCCATGTAC
CTGATCGCCA ACCTCGCGAT CGGCGGAAGC TGGCCGGGCG ATCCCGACGC GCGGACGGTG
ATGCCCGCGC GCATGGAGAT CGACCATATC CGCGTCTGGC GGTTCGCCGA CCGCCCCGGC
GGGGCGGTCA GGCGGCGGTG A
|
|---|
| Protein sequence | MRIHIISGIA LFAGSVAAFA IGAAPDSPPR SGPPPGLAMR MSFEENFDGR ALRDDVWRTA
YKTCGKAGTI ANRSLYGNRE RQIYFDRDFL DAGVQPFEVR DGKLTITARP LPPAVKAKLD
GALGKQPANI RGSALAQARY SSGLITTKCS FEQAYGYFEI RARWTGGKGI WPAFWLLPAK
GGWPPEIDIL EAHGDKPGTV FQSLHSKRQK SITRKATVPG RADAFHLYAV LWTPETLDYY
VDGVRTASIP TTADASQPMY LIANLAIGGS WPGDPDARTV MPARMEIDHI RVWRFADRPG
GAVRRR
|
|---|
| |