| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4520 |
|---|
| Symbol | |
|---|
| ID | 5196211 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 4967312 |
|---|
| End bp | 4967878 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640584073 |
|---|
| Product | LemA family protein |
|---|
| Protein accession | YP_001264996 |
|---|
| Protein GI | 148557414 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1704] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.15394 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCTCT GGATTTCGGT CGGCGTCGCG GCGCTGCTGC TCGTCTGGCT CGTCGCCATC
TACAACCGGC TGGTCCGGCT GCGCGCGCTC GTGCGCGAGG GGTGGAGCGG CATCACCGTC
CAGCTTCGCC GCCGGGCGGA CCTGATCCCC AACCTCGTCT CCACCGTCGA AGGCTATGCC
GCGCATGAAC GCGGCCTGTT CGAGGCCGTC ACCGCCCAGC GGGGCGAGGC GGCGACGGCG
AAGGGCGTCG ACGCCACCGC CCGCGCCGAC GCGCGGATGA GCGGCATGAT CGGACAGCTC
TTCGCGGTGG CGGAGGCCTA TCCCGACCTC AAGGCCGACG CCAATTTCCG CCAGCTCCAG
GACGAGCTGT CGCAGATCGA GGAGGAACTG GCCGGCGCGC GCCGCTATTA CAACGCGACG
GTGCGGGACC TGAACAGCTC GATCCAATCC TTCCCCAACG TCCTCGTCGC CGGCCCGTTC
GGCTTCCGCG AGGAGGAGAG CTATGCCGAC GACGTCGCGG CGCTCCAGGC CGCGCCGCGG
GTGACGTTCG GCGCCGGCGG GCGCTGA
|
|---|
| Protein sequence | MGLWISVGVA ALLLVWLVAI YNRLVRLRAL VREGWSGITV QLRRRADLIP NLVSTVEGYA
AHERGLFEAV TAQRGEAATA KGVDATARAD ARMSGMIGQL FAVAEAYPDL KADANFRQLQ
DELSQIEEEL AGARRYYNAT VRDLNSSIQS FPNVLVAGPF GFREEESYAD DVAALQAAPR
VTFGAGGR
|
|---|
| |