| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4513 |
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| Symbol | |
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| ID | 5199312 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 4959341 |
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| End bp | 4960783 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 640584066 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001264989 |
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| Protein GI | 148557407 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.224973 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.972576 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTTCTC CCTTCTGGCT TGTGCCGATG ACCCTGCTGG CCGGCTGCAC CGTCGGGCCC
GATTATCGCG GCCCCGTCTC GGCGGGCGCC GCCCCGCCGC CTGCCGCCTT CGCGCGCGCC
GATCGCGACG CCGCCCCGCA GGCGCCCGCC GCTGCGGCCT GGTGGACCGC GCTCGGCGAT
CCGGTGCTCG ACGAGCTCGA GCGGCGCGCG CTGGCGGGCA GCCCCAGCGT CGCGATCGCC
CAGGCGCGGC TCAACCAGGC GCGGTCGGCG CTCGGCCTCG AACGCGCCAA TTCGCTGCCC
AAGGCGAACG CCTCGGCGGT CTATGTCCAC GCCCGCGTGC CCGGCGTCGA TCTCGGCTCC
TCGAACCAGA ATGGCGGGAC CGGCGGCGGT GGCGGCACGG GCGAGGACCA GGAATCGCTC
AACTTCTACA ATGTCGGCTT CGACGCGAGC TGGGAGATCG ACCTGTTCGG CGGCCAACGC
CGCAACCTGG AGGCGGCGCG CGCCTCGCTC GGCGCGGCGG AGGCCAACCT CGCCGACGCG
CGGGTCAGCC TCGCCGCCGA GGTCGCCCAG GCCTATGTCG CGCTGCGCGA CCGCCAGCAC
CGACTGGAGC TGGCGCGCGA GTCGGCGGAG AAGCAGCGCG CCATCTACGA CCTGACCGCT
GAGCGGCGCG ACCGGGGCGC GGCCTCCACC CTCGACGTCG AGCGCCAGCG GGGCCAGGTC
GAGCAGTCCA ACGCGGCGGT GCTGCCGCTC GGTGCCGACT ATGACGCCTA TCGCAACGCG
CTCGCGACGC TGACCGGCGA GGTCCCCGGC GCGCTCGACG ATCTGCTCGC CGCTCCGGCG
GCGGTGCCGC TGCCCCCGGC CGAGGTGGCG GTTGGCGATC CGGCGGCGCT GCTCCAGCGC
CGGCCGGACG TGCGCGCGGC CGAGCGCAAG CTCGCGGCCT CGACCGCGAA GATCGGCGTG
GCGAAGGCCG CCGCCTTTCC GCGCCTCAGC TTCCTGGGGC TGATCGGCCT CGGCGGCACC
AGCATCGGCG ACGTCGTCGA TCCCGACAAG CTGGCGGCGG TCGCGGTGCC GCAGTTGAGC
TGGAACTTCC TCGACTTCGG CCGCAACGCG GCGCGGGTCG GGCAGGCGGA GGGCGCGCGC
GACGAGGCTG CCGCCCAATA TCGATCGGCC GTGCTCGTGG CGCTCCGCGA TGCCGAGGAC
GCATTGTCGC GCTACGGCGC CCGCCGCCAG GCGGTCGTCA CCGCCGCGCG CAGCAAGGCG
TCGGCCGATA CCAGCGCGAC GCTGGTGCGC CAGCGCTTCG ACGCCGGGAC CGCGACGCGG
ATCGAGCTGC TCGACGCCGA ACGGCAGCGC ATCGCGGCCG ACCAGGCGCT GATCCAGGCC
AAGGCGCAGA TGACCACCGA CTTCATCGCC CTCGAAAAGG CGCTCGGCCT CGGCTGGGAG
TGA
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| Protein sequence | MRSPFWLVPM TLLAGCTVGP DYRGPVSAGA APPPAAFARA DRDAAPQAPA AAAWWTALGD
PVLDELERRA LAGSPSVAIA QARLNQARSA LGLERANSLP KANASAVYVH ARVPGVDLGS
SNQNGGTGGG GGTGEDQESL NFYNVGFDAS WEIDLFGGQR RNLEAARASL GAAEANLADA
RVSLAAEVAQ AYVALRDRQH RLELARESAE KQRAIYDLTA ERRDRGAAST LDVERQRGQV
EQSNAAVLPL GADYDAYRNA LATLTGEVPG ALDDLLAAPA AVPLPPAEVA VGDPAALLQR
RPDVRAAERK LAASTAKIGV AKAAAFPRLS FLGLIGLGGT SIGDVVDPDK LAAVAVPQLS
WNFLDFGRNA ARVGQAEGAR DEAAAQYRSA VLVALRDAED ALSRYGARRQ AVVTAARSKA
SADTSATLVR QRFDAGTATR IELLDAERQR IAADQALIQA KAQMTTDFIA LEKALGLGWE
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