| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4509 |
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| Symbol | |
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| ID | 5200174 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 4953612 |
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| End bp | 4955570 |
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| Gene Length | 1959 bp |
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| Protein Length | 652 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640584062 |
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| Product | membrane protease FtsH catalytic subunit |
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| Protein accession | YP_001264985 |
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| Protein GI | 148557403 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0465] ATP-dependent Zn proteases |
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| TIGRFAM ID | [TIGR01241] ATP-dependent metalloprotease FtsH |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.112611 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGACG AAAAAGAGCC GAAACAACCC AACCCCTGGA TGAAGAGCCT CGCCATCTGG
ATGGGTATCC TGCTGGCGCT CGTCGTCTTC GTGTCGATGT TCGAAAGCTC GTCGCGTACC
GCGGCGGGCG ATCAGATCGC CTATTCGGAA TTCCTCGCCC GCGTCGACGA CGGCCAGGTG
CGCGAGGCCG ACATCGGCGA CGGCATGATC AGCGGCAAGT TCAACAACGG CGCGGCGTTC
AGCACCAACG CGCCCAATGA TCCGATGCTG ATCCAGCGGC TCGCCGAGAA GAACGTCACC
TTCCGCGCCA AGCCGGCCGA GCAGACCAGC TTCTGGATGA TCATGCTCTA CCAGTCGCTG
CCCTTCCTGC TGATCCTCGG CATCGCCTTC TTCGTGATGC GCCAGATGCA GAAGAACGCA
GGCTCGGGCG CGATGGGCTT CGGCAAGTCG CGCGCGCGGA TGCTGACCGA GAAGCACGGC
CGCGTCACCT TCGACGACGT CGCCGGCATC GACGAGGCGC GCGAGGAGCT TCAGGAGATC
GTCGACTTCC TGAAGGACCC GACCAAATTC GCCCGTCTCG GCGGCAAGAT CCCGAAGGGC
GCGCTGCTGG TCGGCTCGCC CGGCACCGGC AAGACGCTGC TCGCCCGCGC CATCGCGGGC
GAGGCGAACG TGCCCTTCTT CACCATCTCG GGCTCCGACT TCGTCGAGAT GTTCGTCGGC
GTCGGCGCCA GCCGCGTCCG CGACATGTTC GAGCAGGCGA AGAAGAACGC GCCGTGCATC
GTCTTCATCG ACGAGATCGA CGCGGTCGGC CGCCATCGCG GCGCCGGCCT CGGCAACGGC
AATGACGAGC GCGAGCAGAC GCTGAACCAG CTGCTCGTCG AGATGGACGG CTTCGAGGCG
AACGAGGGCA TCATCATCGT CGCGGCGACC AACCGCCCCG ACGTCCTCGA TCCCGCGCTG
CTGCGGCCGG GCCGCTTCGA CCGCCAGGTC GTCGTGCCGC GCCCCGACAT CGAGGGCCGC
GAGAAGATCC TCGCCGTCCA CATGAAGAAG GTGCCGCTGG CGCCCGACGT CAACGCGCGC
ACCATCGCGC GCGGCACGCC GGGCTTCTCG GGCGCCGATC TCGCCAACCT CGTCAACGAG
GCCGCGCTCC TCGCCGCGCG CAAGGGCAAG CGCCTCGTCG CGATGAAGGA GTTCGAGGAG
GCCAAGGACA AGGTCATGAT GGGCGCCGAG CGAAAGTCCA TGGTCATGAC CGAGGACGAG
AAGAAGGCGA CCGCCTATCA TGAGGCCGGC CATGCCCTCG TCTCGCTCCA CGTGCCCGGC
TGCGATCCGC TCCACAAGGT GACGATCATC CCGCGCGGCC GCGCGCTGGG CGTGACCTGG
AACCTGCCCG AGCGCGACCG CTACTCGATG ACGATGAAGC AGATGAAGGC GCGCCTCGCG
CTCTGCTTCG GCGGCCGCAT CGCCGAGCAG CTCATCTATG GCGCGGACGA GCTCAACACC
GGCGCCTCCA ACGACATCCA GCAGGCCACC GACATGGCCC GCTCGATGGT GATGGAATAT
GGCATGTCGG AGAAGCTCGG CTGGCTGCGC TACCGCGACA ATCAGGACGA GATTTTCCTC
GGCCATTCGG TCGCGCGCAA CCAGAGCGTG TCGGAAGCGA CCGCCCAGCT GATCGACCAG
GAGGTCCGCC GCCTGATCGA GGAGGCCGAG GGGGCCGCGC GCAAGGTGCT CACCGACCAT
CTCGACGAGC TCCACCGCCT CGCCACAGCG CTGCTCGAAT ATGAGACGCT GTCGGGCGAG
GAGGCCAAGC GGGTCATCGT CGGCGACGAT ATCGGCCGCG ACCAGGGCAA TAGCCGCGCG
CCGGCCGCGC TCAGCACCGG CGGCTCGTCG ATCCCGAAGA GCCGGCGTCC CGGCAGCGGA
TCGAGCGGCG GCGGCTGGGG CGAGCCCAAG CCCGCCTGA
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| Protein sequence | MNDEKEPKQP NPWMKSLAIW MGILLALVVF VSMFESSSRT AAGDQIAYSE FLARVDDGQV
READIGDGMI SGKFNNGAAF STNAPNDPML IQRLAEKNVT FRAKPAEQTS FWMIMLYQSL
PFLLILGIAF FVMRQMQKNA GSGAMGFGKS RARMLTEKHG RVTFDDVAGI DEAREELQEI
VDFLKDPTKF ARLGGKIPKG ALLVGSPGTG KTLLARAIAG EANVPFFTIS GSDFVEMFVG
VGASRVRDMF EQAKKNAPCI VFIDEIDAVG RHRGAGLGNG NDEREQTLNQ LLVEMDGFEA
NEGIIIVAAT NRPDVLDPAL LRPGRFDRQV VVPRPDIEGR EKILAVHMKK VPLAPDVNAR
TIARGTPGFS GADLANLVNE AALLAARKGK RLVAMKEFEE AKDKVMMGAE RKSMVMTEDE
KKATAYHEAG HALVSLHVPG CDPLHKVTII PRGRALGVTW NLPERDRYSM TMKQMKARLA
LCFGGRIAEQ LIYGADELNT GASNDIQQAT DMARSMVMEY GMSEKLGWLR YRDNQDEIFL
GHSVARNQSV SEATAQLIDQ EVRRLIEEAE GAARKVLTDH LDELHRLATA LLEYETLSGE
EAKRVIVGDD IGRDQGNSRA PAALSTGGSS IPKSRRPGSG SSGGGWGEPK PA
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