Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4509 |
Symbol | |
ID | 5200174 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 4953612 |
End bp | 4955570 |
Gene Length | 1959 bp |
Protein Length | 652 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640584062 |
Product | membrane protease FtsH catalytic subunit |
Protein accession | YP_001264985 |
Protein GI | 148557403 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0465] ATP-dependent Zn proteases |
TIGRFAM ID | [TIGR01241] ATP-dependent metalloprotease FtsH |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.112611 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGACG AAAAAGAGCC GAAACAACCC AACCCCTGGA TGAAGAGCCT CGCCATCTGG ATGGGTATCC TGCTGGCGCT CGTCGTCTTC GTGTCGATGT TCGAAAGCTC GTCGCGTACC GCGGCGGGCG ATCAGATCGC CTATTCGGAA TTCCTCGCCC GCGTCGACGA CGGCCAGGTG CGCGAGGCCG ACATCGGCGA CGGCATGATC AGCGGCAAGT TCAACAACGG CGCGGCGTTC AGCACCAACG CGCCCAATGA TCCGATGCTG ATCCAGCGGC TCGCCGAGAA GAACGTCACC TTCCGCGCCA AGCCGGCCGA GCAGACCAGC TTCTGGATGA TCATGCTCTA CCAGTCGCTG CCCTTCCTGC TGATCCTCGG CATCGCCTTC TTCGTGATGC GCCAGATGCA GAAGAACGCA GGCTCGGGCG CGATGGGCTT CGGCAAGTCG CGCGCGCGGA TGCTGACCGA GAAGCACGGC CGCGTCACCT TCGACGACGT CGCCGGCATC GACGAGGCGC GCGAGGAGCT TCAGGAGATC GTCGACTTCC TGAAGGACCC GACCAAATTC GCCCGTCTCG GCGGCAAGAT CCCGAAGGGC GCGCTGCTGG TCGGCTCGCC CGGCACCGGC AAGACGCTGC TCGCCCGCGC CATCGCGGGC GAGGCGAACG TGCCCTTCTT CACCATCTCG GGCTCCGACT TCGTCGAGAT GTTCGTCGGC GTCGGCGCCA GCCGCGTCCG CGACATGTTC GAGCAGGCGA AGAAGAACGC GCCGTGCATC GTCTTCATCG ACGAGATCGA CGCGGTCGGC CGCCATCGCG GCGCCGGCCT CGGCAACGGC AATGACGAGC GCGAGCAGAC GCTGAACCAG CTGCTCGTCG AGATGGACGG CTTCGAGGCG AACGAGGGCA TCATCATCGT CGCGGCGACC AACCGCCCCG ACGTCCTCGA TCCCGCGCTG CTGCGGCCGG GCCGCTTCGA CCGCCAGGTC GTCGTGCCGC GCCCCGACAT CGAGGGCCGC GAGAAGATCC TCGCCGTCCA CATGAAGAAG GTGCCGCTGG CGCCCGACGT CAACGCGCGC ACCATCGCGC GCGGCACGCC GGGCTTCTCG GGCGCCGATC TCGCCAACCT CGTCAACGAG GCCGCGCTCC TCGCCGCGCG CAAGGGCAAG CGCCTCGTCG CGATGAAGGA GTTCGAGGAG GCCAAGGACA AGGTCATGAT GGGCGCCGAG CGAAAGTCCA TGGTCATGAC CGAGGACGAG AAGAAGGCGA CCGCCTATCA TGAGGCCGGC CATGCCCTCG TCTCGCTCCA CGTGCCCGGC TGCGATCCGC TCCACAAGGT GACGATCATC CCGCGCGGCC GCGCGCTGGG CGTGACCTGG AACCTGCCCG AGCGCGACCG CTACTCGATG ACGATGAAGC AGATGAAGGC GCGCCTCGCG CTCTGCTTCG GCGGCCGCAT CGCCGAGCAG CTCATCTATG GCGCGGACGA GCTCAACACC GGCGCCTCCA ACGACATCCA GCAGGCCACC GACATGGCCC GCTCGATGGT GATGGAATAT GGCATGTCGG AGAAGCTCGG CTGGCTGCGC TACCGCGACA ATCAGGACGA GATTTTCCTC GGCCATTCGG TCGCGCGCAA CCAGAGCGTG TCGGAAGCGA CCGCCCAGCT GATCGACCAG GAGGTCCGCC GCCTGATCGA GGAGGCCGAG GGGGCCGCGC GCAAGGTGCT CACCGACCAT CTCGACGAGC TCCACCGCCT CGCCACAGCG CTGCTCGAAT ATGAGACGCT GTCGGGCGAG GAGGCCAAGC GGGTCATCGT CGGCGACGAT ATCGGCCGCG ACCAGGGCAA TAGCCGCGCG CCGGCCGCGC TCAGCACCGG CGGCTCGTCG ATCCCGAAGA GCCGGCGTCC CGGCAGCGGA TCGAGCGGCG GCGGCTGGGG CGAGCCCAAG CCCGCCTGA
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Protein sequence | MNDEKEPKQP NPWMKSLAIW MGILLALVVF VSMFESSSRT AAGDQIAYSE FLARVDDGQV READIGDGMI SGKFNNGAAF STNAPNDPML IQRLAEKNVT FRAKPAEQTS FWMIMLYQSL PFLLILGIAF FVMRQMQKNA GSGAMGFGKS RARMLTEKHG RVTFDDVAGI DEAREELQEI VDFLKDPTKF ARLGGKIPKG ALLVGSPGTG KTLLARAIAG EANVPFFTIS GSDFVEMFVG VGASRVRDMF EQAKKNAPCI VFIDEIDAVG RHRGAGLGNG NDEREQTLNQ LLVEMDGFEA NEGIIIVAAT NRPDVLDPAL LRPGRFDRQV VVPRPDIEGR EKILAVHMKK VPLAPDVNAR TIARGTPGFS GADLANLVNE AALLAARKGK RLVAMKEFEE AKDKVMMGAE RKSMVMTEDE KKATAYHEAG HALVSLHVPG CDPLHKVTII PRGRALGVTW NLPERDRYSM TMKQMKARLA LCFGGRIAEQ LIYGADELNT GASNDIQQAT DMARSMVMEY GMSEKLGWLR YRDNQDEIFL GHSVARNQSV SEATAQLIDQ EVRRLIEEAE GAARKVLTDH LDELHRLATA LLEYETLSGE EAKRVIVGDD IGRDQGNSRA PAALSTGGSS IPKSRRPGSG SSGGGWGEPK PA
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