Gene Swit_4504 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_4504 
Symbol 
ID5196639 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp4946986 
End bp4948002 
Gene Length1017 bp 
Protein Length338 aa 
Translation table11 
GC content70% 
IMG OID640584057 
Product2-nitropropane dioxygenase, NPD 
Protein accessionYP_001264980 
Protein GI148557398 
COG category[R] General function prediction only 
COG ID[COG2070] Dioxygenases related to 2-nitropropane dioxygenase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.372283 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.089603 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGGCG GTGCCCGACT CGCCGCCCTG ATGGAGCGCG GCGCGGCCCT GCTGGGCAGC 
GACTATGCGA TCCTCGGCGG GGCGATGAGC TGGGTTTCCG AACGGAACCT CGTCGCCGCC
ATGTCGAATG CCGGCTGCTT CGGCGTGATC GCGTGCGGCG CGATGACGCC CGAGCTGCTC
GATGCCGAGA TCGCGGGCAC CAGGGCGCTG ACCGCGAAGC CGTTCGGCGT CAACCTGATC
ACCATGCACC CGCAGCTCAC CGACCTGATC GAGGTCTGCG CGAAGCATGG CGTCGGTCAT
GTCGTGCTGG CCGGCGGCCT GCCGCCGGGC GGCGCGATCG AGCGGATCAA GGCCTCGGGC
GCGAAGGTCA TCTGCTTCGC CCCGGCGCTC GCGCTGGCGA AGAAGCTGAT CCGCTCGGGC
ATCGACGCGC TGGTGATCGA GGGCATGGAG GCCGGCGGCC ATATCGGCCC GGTCTCGACC
TCGGTGCTGG CGCAGGAGAT ATTGCCGGTC GTCGCCGGCG AGCTGCCGGT GTTCGTCGCC
GGCGGGATCG GCCGGGGCGA AGCGATCGCC GGCTATCTCG AAATGGGCGC TGCGGGCGTC
CAGCTCGGCA CCCGCTTCGT TTGTGCCGCC GAATCGATCG CGCATCCGAA CTTCAAGAGG
GCGTTCATCC GCGCCTCGGC GCGTGATGCG ATCACCAGCG TCCAGATCGA CCCGCGCCTG
CCGGTCATCC CGGTCCGCGC ACTGCGCAAC GCCTCGTCCG AGCTGTTCAC CGCCAAGCAG
CGCGAGGTCG CCCAGCTCCT CGACGACGGC AAGGTCGAGA TGGCCGAGGC CCAGCTCCAG
ATCGAGCATT ACTGGGCCGG CGCACTCCGC CGCGCGGTGA TCGACGGCGA TGTCGAGCAT
GGCTCGGTGA TGGCGGGCCA GTCGGTCGGC ATGGTCACGA AGGAAGAGCC GCTCGCCGAC
ATCGTCGCGA CCCTGATCGG CGAGGCGTCG GCGGCGCTGG AGCAGCGCGC GGCCTGA
 
Protein sequence
MSGGARLAAL MERGAALLGS DYAILGGAMS WVSERNLVAA MSNAGCFGVI ACGAMTPELL 
DAEIAGTRAL TAKPFGVNLI TMHPQLTDLI EVCAKHGVGH VVLAGGLPPG GAIERIKASG
AKVICFAPAL ALAKKLIRSG IDALVIEGME AGGHIGPVST SVLAQEILPV VAGELPVFVA
GGIGRGEAIA GYLEMGAAGV QLGTRFVCAA ESIAHPNFKR AFIRASARDA ITSVQIDPRL
PVIPVRALRN ASSELFTAKQ REVAQLLDDG KVEMAEAQLQ IEHYWAGALR RAVIDGDVEH
GSVMAGQSVG MVTKEEPLAD IVATLIGEAS AALEQRAA