| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4468 |
|---|
| Symbol | |
|---|
| ID | 5199686 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 4914042 |
|---|
| End bp | 4914800 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640584021 |
|---|
| Product | hemolysin A |
|---|
| Protein accession | YP_001264944 |
|---|
| Protein GI | 148557362 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1189] Predicted rRNA methylase |
|---|
| TIGRFAM ID | [TIGR00478] hemolysin TlyA family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 0.660096 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTCGG GCGTGCGGGC CGATCAGTTG CTGGTGGATC GCGGGCTGGT GGAAAGCCGG
TCGCGGGCGC AGGCGTTGAT CCTGGCGGGG CTCGTCTTTT CCGGTGAGCG CAAGATCGAG
AAGGCCGGTC AGCCAATCAA GCCCGATGCA GCGATCGAGG TGCGCGGGCG CGACCATCCG
TGGGTTTCGC GAGGCGGGAT CAAGCTGGCG CATGGACTTG AGCATTTCGG CTGGAGCGTC
GAAGGGGCCG TCGCGATCGA CGTCGGCAGT TCGACCGGCG GGTTCACCGA CGTGCTGCTG
AATGGCGGTG CCCGGCGGGT CTATGCGGTG GATTCGGGCA CCAACCAGCT TGCCTGGAAG
CTGCGCAACG ATCCGCGTGT AGTCGTCCAC GAACAGACCA ACGCGCGTTT CCTGACGAGC
GAGCATGTTC CCGAACCGGT CGACGTCATC GTATGCGATG CGAGTTTCAT CTCGCTGGCC
AAGGTGTTGG CGGCGCCTCT GGGTTTTGCA CGGCCGGGCG CGCATCTGGT CGCGCTGATC
AAGCCGCAGT TCGAAGCGGG ACGGGAGGAG GTCGGCAAGG GCGGGGTGGT GCGGGATCCG
GCCGTGCATG AACGCGTCTG CGCCCAGGTC GCCGCCTGGA TCGAGGGGCA GGGTTGGCAG
GTTGCCGGCG TGACCGCCAG TCCGATCACG GGACCGGAAG GTAATGTCGA ATTCCTGATT
GGAGCGGTCC GGCAGGACGG CGGGCAGGGG GAGCGCTGA
|
|---|
| Protein sequence | MASGVRADQL LVDRGLVESR SRAQALILAG LVFSGERKIE KAGQPIKPDA AIEVRGRDHP
WVSRGGIKLA HGLEHFGWSV EGAVAIDVGS STGGFTDVLL NGGARRVYAV DSGTNQLAWK
LRNDPRVVVH EQTNARFLTS EHVPEPVDVI VCDASFISLA KVLAAPLGFA RPGAHLVALI
KPQFEAGREE VGKGGVVRDP AVHERVCAQV AAWIEGQGWQ VAGVTASPIT GPEGNVEFLI
GAVRQDGGQG ER
|
|---|
| |