| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4403 |
|---|
| Symbol | |
|---|
| ID | 5199921 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 4853380 |
|---|
| End bp | 4854405 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640583955 |
|---|
| Product | TrkA domain-containing protein |
|---|
| Protein accession | YP_001264879 |
|---|
| Protein GI | 148557297 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0569] K+ transport systems, NAD-binding component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.602366 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTCCGCC CAAGACCGCG TCGTGACCAG AGGCTGCTTC TCCACCGCAA GAGCGGGACG
CCGGTCTGGC TGTCGCTGCT GTGGCGGGTG GCGCTGGCCT TCGCGCTGAT CGCGGTCGCG
CTGGCCGGGC ACTGGATCGA CCGGGGCGGG CTGCGCGACA ATATCGACGG CGCGATCAGC
TTCGTCGACG TGCTCTATTT CACGATGATC ACAGTCACCA CGGTCGGCTA TGGCGATATC
GTGCCGGTGA CCGAGCGGGC CCGCCTGTTC GACACCTTCG TCGTCACGCC GGTCCGGCTG
TTCGTCTGGC TGATCTTCCT GGGGACCGCC TATGAATTCC TGCTCAAGCA TGTCTGGGAG
AAGTGGCGTA TGAGCGTGAT CCAGCGGAAG CTGCGCGGCC ATGTCGTGAT CGCCGGCTAT
GGCACGACCG GATCGGAGGC GGCGAGCGAG CTGGTCCGGC GTGGCCTCAC GCCCGCCGAG
ATCGTCGTCA TCGATCCGCG CCAGGACAAT CTGCGCGCGG CCGAAGCGAG CGGCGCCAAT
GTGATCGACG GCGACGCGAC CCGCAATTCG ACCCTGGAGG CGGTGCGGGT CGCCGAAGCC
AAGGCGATCA TCGTCGCCGC CGGGCGTGAC GATACGTCGA TCCTGATCGT GCTCACCGCT
CGGCGGCTGG CGCCCGGCGT GCCGATCAGC GTGATCATCC GGTCCGAGGA CAATGAGGCG
CTGGCGCGAC AGGCGGGCGC CGACACGGTG ATCAACCCGG CCAGCTTCGC CGGGCTGCTG
CTGGCCGGAT CGACCCATGG GCCGCACATC GCCGACTATA TGGCCGACCT CGCCAATGCC
GACGGGCGGG TGACGCTGCG CGAACGGGCC GTGTCGGCGG AGGAAGTGGG CAAGCCGCTG
GCGGCGATCG TCACCGGCCT CGGCCTGCGG ATCTACCGCG ACGGGGCGCC TCACGGTTTC
TGGGAGGAGG CCGCCGGCCG GCTGGAATCC GGCGACCAGA TCGTCGAGGT GGTCCCGAGG
AGTTGA
|
|---|
| Protein sequence | MLRPRPRRDQ RLLLHRKSGT PVWLSLLWRV ALAFALIAVA LAGHWIDRGG LRDNIDGAIS
FVDVLYFTMI TVTTVGYGDI VPVTERARLF DTFVVTPVRL FVWLIFLGTA YEFLLKHVWE
KWRMSVIQRK LRGHVVIAGY GTTGSEAASE LVRRGLTPAE IVVIDPRQDN LRAAEASGAN
VIDGDATRNS TLEAVRVAEA KAIIVAAGRD DTSILIVLTA RRLAPGVPIS VIIRSEDNEA
LARQAGADTV INPASFAGLL LAGSTHGPHI ADYMADLANA DGRVTLRERA VSAEEVGKPL
AAIVTGLGLR IYRDGAPHGF WEEAAGRLES GDQIVEVVPR S
|
|---|
| |