Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4372 |
Symbol | |
ID | 5198528 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 4826739 |
End bp | 4828358 |
Gene Length | 1620 bp |
Protein Length | 539 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640583924 |
Product | AMP-dependent synthetase and ligase |
Protein accession | YP_001264848 |
Protein GI | 148557266 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCGATT CGCATGTCAG GGGAGCCGAT TTCCCGCCCC TGCTGGACAT GACCATCGGC GAACTGCTCG AAGCCACCGC GACCAGGCTG CCCGAGGCGA CGGCGCTGAT CGTCCGCCAC CAGGGCATAA GATGGAGCTA TGCCGAACTG CTCGCGCGGG TCGATGATCT CGCGCGCGGT TTCCTTGGCG CGGGGCTGAA GCCCGGCGAC CGGATCGGCA TCTGGGCGCC CAATTGCGTC GAATGGGTGC TGGTCCAGTT CGCGGCCGCG CGCGCCGGAC TGGTGCTGGT CAACATCAAC CCGGCCTATC GCGCCGGCGA GATGGCGCGC GCGCTACAGA TGGTCGGCTG CGCGGCGCTG GTGCTCGCCC GGTCGTTCAA GTCGAGCGAC TATGTCGCGA TGCTCGCCGA GGTCCGTGGC GAACTGCCTG AGCTGCGGCT CGCCTTCTCG ATCGGGGAAG GCGAGCATCC GGGATGCCGG CCGCTCGCCT CGGTGATGGG CGGCGACGCG CCGCTGCCGC GCGACGTCCG GCCCGACGAC CCCACCAACA TCCAGTTCAC CAGCGGCACC ACCGGCCTGC CCAAGGGCGC CACGCTCTCC CACCGCAACA TCGTCAACAA CGGCTATATG GTGGGCCATC GCATCGGCCT GTCGTCGGCC GACACGCTCT GCATTCCGGT GCCGCTCTAC CATTGCTTCG GCATGGTGAT GGGCAACCTC GCCTGCGTCG CGCACGGCGC CACCATGTGC TTCCCCGGCG AGGGCTTCGA TCCGGGGAGC ACCCTCGAAG CGGTGGCGGC CGAGGGGTGC ACCGCGCTCT ACGGGGTGCC GACGATGTTC GTCGCGATGC TCGAGTATCC CGATTTCGAC CGCCATGACC TCGGCACGCT GCGCACCGGC ATCATGGCCG GGTCGCTCTG CCCGATCTCG GTGATGCGCG CGGTGCTCGA CCGGATGAAC ATGCGCGAGG TGACGATCGC CTATGGCATG ACCGAGACGA GCCCGGTCAG CTTCCAGTCG GCGATGGACG ACGCCATCGA GCTGCGCGTC TCGACGGTCG GGCAGGTGCA GCCGCACCTC GAGGCGAAGG TGGTCGATGC CGACGGGAAG GTCGTCCCGC TGGGCGAGCC GGGCGAGCTG TGCACGCGCG GCTATTCGGT GATGCTCGGC TATTGGGGCG ACCCGGAGAA GACCGCCGAC GTGATCGACG CCGAGGGCTG GATGCACACC GGCGACCTGG CGACGCTGGA CGAGCAGGGC TATGGCCGGA TCGTCGGCCG CATCAAGGAC ATGATCATCC GCGGCGGCGA GAATATCTAC CCGCGCGAGA TCGAGGAGCA TCTGCTCACC CATCCCGACA TCGTCGACGC GCAGATCTTC GGCGTGCCCG ACGCGAAGTT CGGCGAGGAG GTCTGCGCCT GGGTGATCTC GCGCAGCGGC GCGTTGTCGG TGGAGGCGGT GATCGCGCAC TGCCGCGACC GGATCGCGCA TTACAAGGTG CCGCGCCATG TCCGGCTGGT CGAGCAGTTC CCGCTGACCG TCACCGGCAA GGTACAGAAA TTCGCGATGC GCGAGATCAT GGTGGCCGAA CTGTCGGTCG ATGTCGATGC GCCGGCCTGA
|
Protein sequence | MTDSHVRGAD FPPLLDMTIG ELLEATATRL PEATALIVRH QGIRWSYAEL LARVDDLARG FLGAGLKPGD RIGIWAPNCV EWVLVQFAAA RAGLVLVNIN PAYRAGEMAR ALQMVGCAAL VLARSFKSSD YVAMLAEVRG ELPELRLAFS IGEGEHPGCR PLASVMGGDA PLPRDVRPDD PTNIQFTSGT TGLPKGATLS HRNIVNNGYM VGHRIGLSSA DTLCIPVPLY HCFGMVMGNL ACVAHGATMC FPGEGFDPGS TLEAVAAEGC TALYGVPTMF VAMLEYPDFD RHDLGTLRTG IMAGSLCPIS VMRAVLDRMN MREVTIAYGM TETSPVSFQS AMDDAIELRV STVGQVQPHL EAKVVDADGK VVPLGEPGEL CTRGYSVMLG YWGDPEKTAD VIDAEGWMHT GDLATLDEQG YGRIVGRIKD MIIRGGENIY PREIEEHLLT HPDIVDAQIF GVPDAKFGEE VCAWVISRSG ALSVEAVIAH CRDRIAHYKV PRHVRLVEQF PLTVTGKVQK FAMREIMVAE LSVDVDAPA
|
| |