Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4350 |
Symbol | |
ID | 5196845 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 4800488 |
End bp | 4802719 |
Gene Length | 2232 bp |
Protein Length | 743 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640583904 |
Product | TonB-dependent receptor |
Protein accession | YP_001264828 |
Protein GI | 148557246 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.425667 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGCAAT CGCAGCTTCG CAGCCTGTCG CAGGCCAGCG GGAAGGCCCT GGCCGCCGCG CTGATGCTGA CGGGCGTCCA TGGCGCGGCG CTGGCGCAGG ACGGCGGCGC GACCGCCGAG GCGGAGGCCC CGGCCTATGG CGACATCGTC GTCACCGCGC AGAAGCGCGA GCAGAATATC CAGAAGGTCG GCGTCGCGAT CAGCGCGCTC GGCAAGCAGG GCCTGGCCGA TCTCGGCCGG CAGGACATCT CCGCGCTGGC GACCAAGCTC CCGAGCGTGC AGGTGCTGGC CTACAGCCCG ACCCTGACCG TCTTCAACAT CCGCGGCGTG TCGCAGAACG ACTTCGCCGA CTCGCAGGAG GCGCCGATCG CCTTCTATAA CGACGAGGTC TATGTCAGCG CGCTCGGCGC GATCAGCGGC CAGATGTTCG ACCTCGAGCG CGTCGAGATG CTGCGCGGGC CGCAGGGCAC GCTGTTCGGG CGCAACGCCA CCGGCGGCCT GATCCAGGTC GTGTCGGCCA AGCCGACCCG CGACCTGACC GGCTTCGGCA CCGTCACCGT CGGCAGCTAC GGCCAGGTCG CGACCGAGGG CGCGATCAGC GGCCCGCTGA GCGACACGCT GCGCGCCCGC CTGTCCTTCT CCACCAACCA TCATGGCGGC TACATCGACA ACAGCATCGG CAAGGACCTC GGCAATTCGA AGTTCTACGG CGGCCGCTTC CAGCTTGCCG GCGACGTCGG CGAGGGCGGC GAGTTCACGC TGAAGCTGCA GGGCCTGCGC AACGACAAGG AGCGGACCGG CGGCCTTTAT TCGCACCGCA CCGCGATCGC CAATGCCGAC GGCCTGGGCG AATATGTCGG CCGGAACGAC AATCCGTTCG GCACCTGCGC CGGCTGCGAC ATGTTCGGCT ATGTCCAGGC GGGCAACGAC CCGTTCAAGG TCGCCTTCAA CGGCCCAAAC AATTTCAGCC GCAGCTATTG GAGCGCGTCG CTGCGCTATG TGCAGGACCT GGGCGGCGTC ACGCTGACCT CGATCAGCGA CTATCAGTAT CTCCGGAAGC GCTACGGCGA GGACGCGGAC ATGTCGCCCG CCAGCACCTT CGCCTATTCG ACCAGCCAGA ACCTCGACCA ATATTCGCAG GAACTGCGGC TGTCGAACAG CAGCGACCGC GCCACCTGGG TGGTCGGCGG CTATGCGATC AAGATCGTCA GCAAGAACGG CTACAACACC GATCTGACCG GCAGCCTGGG CCTCAGCGAG ATCTATGGCG GCACGCTCAA GACGACCTCG TTCGCCGGCT TCGGCCAGCT CGAATACAAC CTGACCGACC AGGTCGCCCT GATCGGCGGC CTGCGCTATT CGGCCGACCG CAAGACGATC GACTTCACCC ATGCCGAGAA CGGCGTGACC GACTTCACCT TCGACCGGGC CAGCGTCGGC AAGCTCGCGC GGCAGAAGTT CAACGACTGG TCGGGCAAGG CCGGCATCAA CTTCAAGCCG AACGAGGACA CGCTGATCTA TGCCAGCGTC AATCGCGGCA TCAAGGGCGG CGGCTTCGGC ACCCCGGCGT TCAACCCCGG CGACCTGACC ACCATCCCGT TCAAGGAAGA GGTGCTGACC GACTATGAGG GCGGCGTGAA GCTGACCCTG TTCGATCGCA CGACCCACCT GAACCTGTCG GCCTTCTACT ACGACTATAA GGACTATCAG GCGTTCGAGC TGGTCGACCT GGCGCTCGCG GTCCGCAACA AGGACGCGAC GATCAAGGGC GTCGAGGCCG AGTTCAACAC CCGTCCGGTC GACGGCCTCT ACCTCCAGAC CTTCGCCACC TATCTCGACA GCAAGGTGAA GGGCGTGATC CTGCCGGGCG GCCGCGTCGC CAATACCCGC ATGCCGCAGG CGCCGAAGTG GAGCATCGGC TGGCTGGTCC GCTACGAGCT CGATGCGGGC CCCGGCCGGC TCGCGCTCCA GACCGACTGG AAATATGACA GCGCGCAATA TCTCTCGACC TTCAACGCGC CGGTCGATCG CCAGCCGGGC CGGGTCGTCG GCAATGCCCG CGTCACCTAT GGCTTCGGCG ACGGCAAGTG GGAGGTTGCG GGCTTCGTCA ACAACCTGAC CGACAAGAAG TACCGGCTCT ACAATCTCGA CCTGTCGGGC CCGTTCGGCT TCACCCAGCA GGCCTATGCC CGGCCGCGCT GGTTCGGCGC GAGCGTCACC CGCAGCCTGT AA
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Protein sequence | MMQSQLRSLS QASGKALAAA LMLTGVHGAA LAQDGGATAE AEAPAYGDIV VTAQKREQNI QKVGVAISAL GKQGLADLGR QDISALATKL PSVQVLAYSP TLTVFNIRGV SQNDFADSQE APIAFYNDEV YVSALGAISG QMFDLERVEM LRGPQGTLFG RNATGGLIQV VSAKPTRDLT GFGTVTVGSY GQVATEGAIS GPLSDTLRAR LSFSTNHHGG YIDNSIGKDL GNSKFYGGRF QLAGDVGEGG EFTLKLQGLR NDKERTGGLY SHRTAIANAD GLGEYVGRND NPFGTCAGCD MFGYVQAGND PFKVAFNGPN NFSRSYWSAS LRYVQDLGGV TLTSISDYQY LRKRYGEDAD MSPASTFAYS TSQNLDQYSQ ELRLSNSSDR ATWVVGGYAI KIVSKNGYNT DLTGSLGLSE IYGGTLKTTS FAGFGQLEYN LTDQVALIGG LRYSADRKTI DFTHAENGVT DFTFDRASVG KLARQKFNDW SGKAGINFKP NEDTLIYASV NRGIKGGGFG TPAFNPGDLT TIPFKEEVLT DYEGGVKLTL FDRTTHLNLS AFYYDYKDYQ AFELVDLALA VRNKDATIKG VEAEFNTRPV DGLYLQTFAT YLDSKVKGVI LPGGRVANTR MPQAPKWSIG WLVRYELDAG PGRLALQTDW KYDSAQYLST FNAPVDRQPG RVVGNARVTY GFGDGKWEVA GFVNNLTDKK YRLYNLDLSG PFGFTQQAYA RPRWFGASVT RSL
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