| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4347 |
|---|
| Symbol | |
|---|
| ID | 5196842 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 4795646 |
|---|
| End bp | 4796569 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640583901 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001264825 |
|---|
| Protein GI | 148557243 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.378595 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGTCAA TGCCAGCATC GTCGGACGCG AACCACTTCG CCAGTTCGCT GCGCGCGGCC
TATGGCGTCT ACGATACCGA GCCGACCTCG TCCGCGATCC GTTCGGCGGG CATGCTGACG
CCGGTGTCGC GCGGGCCGTT CGAAGGCTAT CTGGTCCACG CGAACGCCGT CCGCAGCAAG
CGCCCCGCCC TGCGCGACCG GTGGGAGGAC TGCGCCTTCA TCCTGATGCC GCTCGCCGGC
GACATCCATG TCGACCATTA TGACCGGCAG AACGTGCTGA GCGCGGGCGA CATGGTGCTG
ATGGATTCGC ACGCGCCGTC GACGATCGAC GCCTTCGGCC GCAACCGCTC GGTCGTGCTC
GCCATGCCGC GCTCGACCGT GTCGCAGCTC CGCCCCGACA GCGACAGGCT GTTCGGCCGA
CGCCTCCAGG GCCGCAAGGG CATCGGCAAC ATGCTCTCCG CGATGCTCGC CAGCATCGTC
GACGCCGACG CGGAAGAGGA GATGGACGCG CGCGATTCGA TGCTGACGCT GTCGGTGACG
ATGTCGCTGC TCGACCGGCT GATCGAGAAC CGCCCGGACA GCGACTCGCA TCGTCGCTCC
CGCGCCGAGG CGGAGATCGG CAAGATGCGC TCCTGGGTGG TCGAGAATGC GGCCGATCCC
GACATGAGCA TCGAGACGCT GGCGCGCCGC TTCGCCCTGT CGCGCCGCAG CCTCTACCGC
CTGTTCGGGG AGGTCGGCGC GACCCCGCGC CAGTGGCTTG CCGACGTGCG GCTCGACGAG
GCGCGCAAAT GGCTGGTCGC CGGCGATCCC CGCTTCCGCA CGGTCAGCCA GGTCGCCTTC
GCCGCCGGCT TCAACGACAG CAGCCACTTC ACCCGCCTGT TCAAGCGCCG CTTCGGCGTC
CTCCCCGGAT CGCTGGCGCG ATAG
|
|---|
| Protein sequence | MGSMPASSDA NHFASSLRAA YGVYDTEPTS SAIRSAGMLT PVSRGPFEGY LVHANAVRSK
RPALRDRWED CAFILMPLAG DIHVDHYDRQ NVLSAGDMVL MDSHAPSTID AFGRNRSVVL
AMPRSTVSQL RPDSDRLFGR RLQGRKGIGN MLSAMLASIV DADAEEEMDA RDSMLTLSVT
MSLLDRLIEN RPDSDSHRRS RAEAEIGKMR SWVVENAADP DMSIETLARR FALSRRSLYR
LFGEVGATPR QWLADVRLDE ARKWLVAGDP RFRTVSQVAF AAGFNDSSHF TRLFKRRFGV
LPGSLAR
|
|---|
| |