Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4330 |
Symbol | |
ID | 5197704 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 4773854 |
End bp | 4776196 |
Gene Length | 2343 bp |
Protein Length | 780 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640583884 |
Product | TonB-dependent receptor |
Protein accession | YP_001264808 |
Protein GI | 148557226 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.971491 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGTCGGGCT TCAGCGCTAG GGCATTCGGG AGATATTTGG TGTCGGTCGG GATGGTCGCG CTCGCCGCGC AGGCGCAGGC GCAGACCCCG CCCCAGCCGG AGGCTGCATC GGACGAGATC ATCGTCACCG CGCAGCGGCG CGTGGAACGG CTGCAGGACG TGCCGATCTC CGCGAGCGTG ATCAGCGGCG CCGACATCCA GAAGAAGAAC ATGACCTCGC TCGAGCAGCT CACCGCCGAG ACGCCGGCCG TGGTCGTGAC CAAGGGCGGC GCCGCCAACC GCCTGTCGAT CCGCGGTGTC GGATCGGGCG ACAACAACCC GCTGTTCGAG CAGTCGGTCG CGACCTTCAT CGACAATGTC TACCAGGGCC GCTCGCGCTC GAACGGCGCC TCCTTCCTGG ACATCGCCCG GGTCGAGATA TTGAAGGGGC CGCAAAGCGT CTATTTCGGC AACAACTCGA TCGCGGGCGT GCTCAACATC GTCACCCGCG ATCCGGGCGA CCGCCTCGAA GGCTATGCCC GAGGCTCCTA TAATTTCGAC TTCAACGCCG CGACGCTCGA GGGCGCGGTC GGCGGACCGA TCAGCGACAC GCTCGGCATC CGGGTGGCCG GCGTCGCCAC GCGCGGCAAC GGCTATATCC GCGACGAGGG GCTGGGCGGC CTGCGCATCC CGCGTGTCCG CTCCTATGCC GGCCGCGCCA CGCTGCGCTG GCAGCCGATC GAGGAACTGA CCTGGACGGT GAAGGCCAGC GCCGAGCATA GCCGCCAGAC CGGCGCGATC GCCGACGAGA TCGCCTATTG CCCGCCCGAT CCCCTGTTCA CCGCCGGCGC GACCGGAAGC TGCCTGGTCG CGCTCAACCG CGGCGAGGAC GTCAAGCTCA ACCAGGTCCG CTCGCACAGC CCGGGCCAGG GCATCGACCT CGACACGCAG AGCTATGTGT CGACCCTCGC CTATGACGCC GGTCCGCTCG AACTGTCGGC GATCACCGCC TACAGCCACA CCAAGTACAA CCAGCGGCTC GACACCGACG GCACCAGCGC GACGCTGACC CACTTCACCA CGCCCGAGCG CTTCTCGCAG TTCAGCCAGG AGTTCCGGAT CTCGACGCCA CGCGACAGCT GGGTCGCGCT CGATGCCGGC GCCTATTTCA ACCGGGAGTA TATCCATGGC GGCGTGAACT ATAATTTCAC GTCGCTCAAC AGCCGCCTGA CCGGCGCCTT CGCCGCGCTC GCGCCGCTCG GCTCGTTCGG CCAGTATGAC GATTACCGCC AGCGGTCGAA GACCTACGCG ACCTATGCGC ATCTGACCTT CCGCCCGACC GAGCAACTGA CCCTCAGCGT CGGCGGCCGC CAGAGCTGGG TCGACAAGTC GATCGTGCTC AACCAGGGCT TCGGCATCGC CGCGAACAGC TTCGGCGACA TCACCCCCTA TCCCGACGCG ACGCTCCAGG CGCTCGGCGA CCGCTTCGGC ACCGCGGCGG GGCTCGGCGT CGCCGCCGTG CGCAACGCCC GCCGGCTGGA CGCGCATTTC AGCCCGTCGG CGGTGCTGTC CTACCAGCCG ACCCCGGCGC TCAACCTCTA CGCCAAATAT ACCAACGGCT TCAAAGCCGG CGGCTTCAAC GGGCTGGAGC ATACCGGCGC CGCGGCGGCC CTGTCCTTCG GCCCCGAATA TGTCGACGGC TATGAAGCGG GCATCAAGAG CCAGTGGTTC AACCGCCGCC TGACCCTGAA CGTCGCGGTG TTCCGCAACG ACTTCAGCGA CCTGCAGGTC TCCGCCTCGC AGAATTTCGG GGTCGGCGTG GTCAACGTCA TCGGCAATGC CGGCGGCGCG CGCGCCCAGG GCATCGAGGT CGAGGGCCGC TGGCGGATCA CCAGCGAACT GACGACCGGC CTCAGCCTGA CGCTGCTCGA CTCCAAATAT ACCGACTATC GCAACGCCGC GGGCAACGCG CTCGACGTGC AGCAGGGCCG CCCCTTCGTC GACCTGACCG GCACGCGGAC GCGCTATGCG CCCAAATATA GCGGCAACTA CACGCTCGAT TATCTGGCGC CGATCACCAG CGGGCTCAAG CTGCACCTGA ACGGCAACGC CTTCTTCACC GGCAAGTATA ATTTCTCGAA CAACAACGAT CCGTTCCTCG CCCAGGACGC CTATGTCCGG CTGGGGGCGA TCATCGGTCT CGCCGATGCC GACGATCGCT GGGAGGTGTC GCTGGTCGGC AAGAACCTGA CCGACAAGCT GGTCCGGATC TTCGGCACCA ACCTCGCCCA GTCGCGCGGC TCCTATCTGA TCGGCACCGA CGAACCGCGC AGCATCGCCA TCCAGGCGAA CCTGCGCTTC TGA
|
Protein sequence | MSGFSARAFG RYLVSVGMVA LAAQAQAQTP PQPEAASDEI IVTAQRRVER LQDVPISASV ISGADIQKKN MTSLEQLTAE TPAVVVTKGG AANRLSIRGV GSGDNNPLFE QSVATFIDNV YQGRSRSNGA SFLDIARVEI LKGPQSVYFG NNSIAGVLNI VTRDPGDRLE GYARGSYNFD FNAATLEGAV GGPISDTLGI RVAGVATRGN GYIRDEGLGG LRIPRVRSYA GRATLRWQPI EELTWTVKAS AEHSRQTGAI ADEIAYCPPD PLFTAGATGS CLVALNRGED VKLNQVRSHS PGQGIDLDTQ SYVSTLAYDA GPLELSAITA YSHTKYNQRL DTDGTSATLT HFTTPERFSQ FSQEFRISTP RDSWVALDAG AYFNREYIHG GVNYNFTSLN SRLTGAFAAL APLGSFGQYD DYRQRSKTYA TYAHLTFRPT EQLTLSVGGR QSWVDKSIVL NQGFGIAANS FGDITPYPDA TLQALGDRFG TAAGLGVAAV RNARRLDAHF SPSAVLSYQP TPALNLYAKY TNGFKAGGFN GLEHTGAAAA LSFGPEYVDG YEAGIKSQWF NRRLTLNVAV FRNDFSDLQV SASQNFGVGV VNVIGNAGGA RAQGIEVEGR WRITSELTTG LSLTLLDSKY TDYRNAAGNA LDVQQGRPFV DLTGTRTRYA PKYSGNYTLD YLAPITSGLK LHLNGNAFFT GKYNFSNNND PFLAQDAYVR LGAIIGLADA DDRWEVSLVG KNLTDKLVRI FGTNLAQSRG SYLIGTDEPR SIAIQANLRF
|
| |