| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4253 |
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| Symbol | |
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| ID | 5199298 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 4685572 |
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| End bp | 4687713 |
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| Gene Length | 2142 bp |
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| Protein Length | 713 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640583807 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001264731 |
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| Protein GI | 148557149 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.90601 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAGA TCAGCCAATC CTGCTGCTGG GCAGCTCTCG CCATCGCGCT CGGCGCGTCC
GGCCAGGCTC TCGCCGAGGC GCCCGCGACC GTCGGCGCGC TTGCCGCGAG CGACGGCGCC
GGCGCCGACG AGGCGACCTC GCCCGGCGAC ATCGTCGTCA CCGCCCTGCG CCGCGACCAG
CGCCTGCAGG AGGCCCCCGC CGCCATGTCG GTCCTGACCT CCGCGACGAT CGAGGCGGCC
GGGGTCAAGA ATCTCGACGA CGTCAGCAAG CTGGTGCCGA GCCTCCGCTT CGAGGCCGGG
CTGCGTGCCG GCGTCCCCAG CATCTCGCTG CGCGGCATCT CCGCCGTCCA GGGCGGCGAC
GCGCCCTTCT CGCTGCTGGT CGACGGCGTC CAGGTGCCGT TCCTCGAACT GTTCAACCAG
GACCTTCTCG ACATCTCGAC GATCGAGCTG CTCAAGGGGC CGCAGGGCGC GCTCTACGGC
CGCGGCGCCA TCGCCGGCGC GCTGCTGATC AACACCCGCG CGCCCGACAA CGAGTTCCGC
GGATCGCTCC ATCTCTCGGC GGCGGAGGGC CGCGACTATA GGGCCTCGGC CACCGTCTCG
GGCCCGATCG TCGAGGACGT GCTGGCCGCG AAGGTCACCG CCGCCTACCA GAACCGCCGC
GGCCTCATCC ACATCCGCAC GCTCGACCGG CCGGGCGACT ATGTCGACCA GGGCACCTTC
AAGGGGCAGC TCCGCTTCAC CCCCGGGCCC AACACGACGG TCGACCTGTT CGGCACCTAC
ATAAAGGGCA ATTCGGGCTG GGGCATGCTC GCCCAGATCC CGGTCGGCGT CCCCGGCGCG
ATCGAGGATT TCCACACTTA CGAGGCGAAC CTCAACTTCC TGGGCGTCAC CAAGCGCAAG
CTGTGGAACA CCGCGCTCAA GATCGACCAG AAGCTCGGCA TCGGGACGAT CACGTCGGTG
TCGCAATATG CCTATGGCAA GAGCAACAAC ATCAACGACT TCGACTATAC GCCTGCCGCG
CAATATGTGA ACTACAACCC GATCGTCGAC AAGGCGTTCA ACCAGGACCT GCGCTTCACC
TCGAACCTCG ACGGCGCGTT CAACTTCATC GTCGGCGCCT TCTACCAGAA GCGCACCGGC
GACAACGACG TCAACGTCCT GACCGATCCC GCCGCCGTTC CGGCGCTGCC GCCGCGCCTG
ATCTCCTATC AGGACTATAA GAGCGAGGCC TATGCCGCCT ACGGCCAGGT CAGCCTCGAC
TTCGACAACG GCCTCAGCTT CCTCGGCGCG CTGCGCTACG ACATCGACAA GCGCGAGGAC
TCGCTCGAGC AGGACCCGAC GAGCTTCGTG AAGCACAAGT TCAAGGCCTG GCAGCCGTCG
GCGACGGTCA AATATCAGGT CAATCGCCAG CTGATGACCT ATGCGACCTT CGGCCGGGGC
TTCCGATCGG GCGGCTTCAA CGCCGCCAAC CTGACGGTCC CCTCGATCGG CGCGCAGCGC
ATCTATCCGA AGGAGATGTC GACCAATTAC GAAATCGGCT TCAAGAGCCA GTTCCTCGAT
CGCCGGCTGA CCTTCAACGC CGCGCTGTTC CGGACCGACT TCGACAATGC GCAGTTCCAG
CAGACCATCG TCGTCCCGGT CCCGGCGCGC TTCATCACCT CGATCGACAA GACGCGGGTG
AAGGGGGCCG AGGCGGACCT GAGCCTGTCG ATCACCCGCG ACCTGGTGCT GACCGGATCG
CTGTCGATCA CCGACTCCAA GATCCGCGAG TTCAGCCCGA TGCCGGCCTA TGACGGCAAC
CAGGCGCCCA ACGTCTACAA GGACAATGAG CAGGTCTCGC TCGAATATCG TCCCGCTTTC
AACGACACCT ATCGCGGCCT GTTCCGCATC GATGCGTCGC GGCGCGGGCG GATCTCCTAC
GACCTGTCGG AGAATTTCAC CTACAAGCCG GTGACCTTCG TCAACGCCCG CATCGGCATC
GAGACCGACG CCTGGTCGCT GTCGGTGTTC GGCAACAACC TGACCAACGA GCGCGCGCCG
ACCTTCTTCT CGGCGCTGGC CTATCGCGTC GCGAGCGCGC GGCTGGCCAA TGTGCCGTTC
AATGCGGGCG TCGACTTCAC CTATCGCTTC GGAGGCCGCT GA
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| Protein sequence | MKKISQSCCW AALAIALGAS GQALAEAPAT VGALAASDGA GADEATSPGD IVVTALRRDQ
RLQEAPAAMS VLTSATIEAA GVKNLDDVSK LVPSLRFEAG LRAGVPSISL RGISAVQGGD
APFSLLVDGV QVPFLELFNQ DLLDISTIEL LKGPQGALYG RGAIAGALLI NTRAPDNEFR
GSLHLSAAEG RDYRASATVS GPIVEDVLAA KVTAAYQNRR GLIHIRTLDR PGDYVDQGTF
KGQLRFTPGP NTTVDLFGTY IKGNSGWGML AQIPVGVPGA IEDFHTYEAN LNFLGVTKRK
LWNTALKIDQ KLGIGTITSV SQYAYGKSNN INDFDYTPAA QYVNYNPIVD KAFNQDLRFT
SNLDGAFNFI VGAFYQKRTG DNDVNVLTDP AAVPALPPRL ISYQDYKSEA YAAYGQVSLD
FDNGLSFLGA LRYDIDKRED SLEQDPTSFV KHKFKAWQPS ATVKYQVNRQ LMTYATFGRG
FRSGGFNAAN LTVPSIGAQR IYPKEMSTNY EIGFKSQFLD RRLTFNAALF RTDFDNAQFQ
QTIVVPVPAR FITSIDKTRV KGAEADLSLS ITRDLVLTGS LSITDSKIRE FSPMPAYDGN
QAPNVYKDNE QVSLEYRPAF NDTYRGLFRI DASRRGRISY DLSENFTYKP VTFVNARIGI
ETDAWSLSVF GNNLTNERAP TFFSALAYRV ASARLANVPF NAGVDFTYRF GGR
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