Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4151 |
Symbol | |
ID | 5199552 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 4565168 |
End bp | 4567462 |
Gene Length | 2295 bp |
Protein Length | 764 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640583705 |
Product | TonB-dependent receptor |
Protein accession | YP_001264629 |
Protein GI | 148557047 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.394779 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.367736 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGACGG TAGCAACCGC GCGGGGCGTG CTCCTTGCCT CGCTGGCTAC GATCGCGATC GGCGGCCGGG CGATGGCGCA GACGGCGGAG GCGCCCGCGG CCGCCCCGCC CCAGGAGGCA GCATCCGACG ATGGCGGCCT GGGCGAGATC ATCGTCACCG CGCAGAAGCG ATCGGAGAAT CTCCAGCGCG TGCCGGTGTC GGTCAGCGCG CTGTCCTCGG CGCAGCTCGA CCAGCAGAAA ATCCGCAACG TCACCTCGAT CGTGTCGCAG ATTCCCAGCC TGCAGGTGAC CGGTCCGTTC AGCGACGGCC TGCCGGTCTT CTCGATCCGC GGCATCTCCT CGCTCGATTT CGGTCATAAC CAGTCGAGCC CGGTCGCGCT CTATGTGGAC GAGGTCTATA AGGGCCTGCC GGTCCTGTCG TCGCTCCAGA TATTCGATCT CGACCGGGTC GAGGTGCTGC GCGGGCCGCA GGGCACGCTG TTCGGGAAGA ACACCACCGG CGGCGCGGTC AACATCTTCA CCAAGCAGCC CGATCTCGGG GATGGCTGGA CCGGCTATCT GTCGGGCGGC ATCGGCAACC TCGCGCGGCG CGAGGTTAAC GGCGGCGCCA ATGTGCCGCT GGTGGAGGAC AAGCTCGCCG GCCGGGTCGC CTTCTCCTAC ACCAATGTCG ACGGCTTCGT GCGCAACCGG CTGCCCGGCA AGAAGGACCA GGGTTCGATC GACGATTTCG CCCTGCGCGC CAGCCTGCTC TACAAGCCCA GCGACGGGCT GCGCTTCCTG TTGCGCGGCA CGCGGACCCG ATCGACCCCC GACAATGCCT ATGGCGGCCT CGCCAAGGAC ATCGGCGTGG CGGGGCCCGG CGGCGTCGGC TTCGGCACCG GCTATACCCG CGCCGGCCTC GGCTTCTTCG AGAATGAATC GGATCGGGAC GGGGTCATCA ACATCCACAA CCAGGGTGTT TCGCTGACCA CCAACTGGGA CCTGAGCGAC AGCGTCGCGC TCACCGCGGT GTCGGCCTAT GACGAAGGCC GCTGGTTCTC GCAGGAGGAC TCGGACGCGA CGCCGTTTCG CATCCAGGAA GCGGATTTCT ACAGCAGGGC CAAGGCCTAT TCGCAGGACC TGCGCCTCGC CTCGACCAGT GACGGGCCGC TGCAATGGAT GGTCGGCGCC TATTATTATC GCGACAAGGT CGATTTCCGG ACGACCTACA AATTCTACTA TGAATATGCG GGCGACGCTG ACGGCAACGG CCAGCTCGAC TGTTTCGACG ACGGGCTGAC CGGCTGCGGC TACGACAATG CCCTGCGCCA GGTCCGCACC AGCCTCGCCC TCTACACGCA GAACAGCTAC AAGCTGGACT CCGGGCTCAG CTTTACCCTC GGCCTGCGCT ACACCCATGA CAACAACCGG CTGAAATCCT ATCGCAGCAC GCTGCGCTAT CTCGATCCGG CGACCGGGCA GGAGGTGCTC AACGCCGCGG TGATCTTCGA CCGGCCGCCC GTCGACAAGC TCAAGTCGGA GAATCTGAGC TGGAAGCTCG GCGTCTCGCA GGAGTTTGCC GGCGGCGCGC TCGCCTATGC CAATTACAGC CGCGGCTGGC GCGGCGGCGC GTTCAACGGC CAGGCCTTCT TCGCCGCGCA GGAGGTGACG GCGGTCGGGC CCGAGCGGCT CGACTCCTGG GAGGTCGGCC TGAAATATCA GACGCCCGAC CGGCGCCTGC GCATCAACAC CGCCGCCTTC TACTATATCT ACCGCGACCA GCAGTTCATC GACGTCACGC CGAACTTCCT CCAGCTCCTG ACCAGCGCGC CCAGGTCGCG GCTCTGGGGT GTCGAAGCCG ACATCGTGGC GCAGCCGCTC GATCCGCTGA CCGTCCGCTT CAGCGTCGCC TATCTCAACG CCAAGTTCCG GGAGGTGACC GTCAGCGGCG TCGACCTTTC GGGCAAGCGG CTGATCCTGG CGCCGGAATG GACGCTGAGC GGCGGCATCG ACTGGCGCGT GGCCGAAGGC GATTTCGGCG GCCTGTTGCT GCATACCGAC TCCCGCTTCA CCTCGCGCGT CTATTACAGC GCCTTCAACC TCCCGCTGAT CAGCCAGAAG GCCAATTCGC TTCACGATGC GCGGTTGACC TGGCAGCTCC CGGGCAAGCG CCTCTCGTTG TCGGCCTGGA TGAAGAACAT CTTCAACGAG AAGACGCTGA ACTTCGTCGC CGATCTGGGC GCCGGCTATA ATTACAACTT CGCCCAGCGC GGCCGGCCCC GCGAATATGG CATCGAGGCA CGCTTCGAAT TCTGA
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Protein sequence | MMTVATARGV LLASLATIAI GGRAMAQTAE APAAAPPQEA ASDDGGLGEI IVTAQKRSEN LQRVPVSVSA LSSAQLDQQK IRNVTSIVSQ IPSLQVTGPF SDGLPVFSIR GISSLDFGHN QSSPVALYVD EVYKGLPVLS SLQIFDLDRV EVLRGPQGTL FGKNTTGGAV NIFTKQPDLG DGWTGYLSGG IGNLARREVN GGANVPLVED KLAGRVAFSY TNVDGFVRNR LPGKKDQGSI DDFALRASLL YKPSDGLRFL LRGTRTRSTP DNAYGGLAKD IGVAGPGGVG FGTGYTRAGL GFFENESDRD GVINIHNQGV SLTTNWDLSD SVALTAVSAY DEGRWFSQED SDATPFRIQE ADFYSRAKAY SQDLRLASTS DGPLQWMVGA YYYRDKVDFR TTYKFYYEYA GDADGNGQLD CFDDGLTGCG YDNALRQVRT SLALYTQNSY KLDSGLSFTL GLRYTHDNNR LKSYRSTLRY LDPATGQEVL NAAVIFDRPP VDKLKSENLS WKLGVSQEFA GGALAYANYS RGWRGGAFNG QAFFAAQEVT AVGPERLDSW EVGLKYQTPD RRLRINTAAF YYIYRDQQFI DVTPNFLQLL TSAPRSRLWG VEADIVAQPL DPLTVRFSVA YLNAKFREVT VSGVDLSGKR LILAPEWTLS GGIDWRVAEG DFGGLLLHTD SRFTSRVYYS AFNLPLISQK ANSLHDARLT WQLPGKRLSL SAWMKNIFNE KTLNFVADLG AGYNYNFAQR GRPREYGIEA RFEF
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