Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4145 |
Symbol | |
ID | 5199077 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 4557027 |
End bp | 4559240 |
Gene Length | 2214 bp |
Protein Length | 737 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640583699 |
Product | TonB-dependent receptor |
Protein accession | YP_001264623 |
Protein GI | 148557041 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.072691 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.786094 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGATACG GGAAGTGTGG CAGCTCTAAT GTGTTCAGGG CTTTTCTTCT GCTGACGACG GCTTGCGCCG CCTCGGCGGC GATGGCCCAA AACTCCTCAG GGCCAGAGGC TTCTGTGCCT GCTCCTTCGG GGGCATCTGC GGAAAACGCC GAGCCTGGGC CTCAAGACAT CATCGTCACA GGGCGCCGAC GCAGCGAGTC CGCTTTCAAT GCACCGGTGG CCGTGTCGGT ACTGACGTCC GGCGCCATAG AATCGTCAGG CGTCGCCCGG CCGGTCGACG TGACGCGGTT CGTTCCGAAC ATGAACATCA CGAGCGTAGG GCGTGCAGGC GAAAATTTCG TGACACTCCG CGGCCTGGCG CAGGCCCGTT CGGCCGACTC GATCGTCGCG GTCATCGTCG ACGGCGTCCA GTTGGCTTCC GCGGAGGAGC TGAGTCAGGA ACTCTTCGAC ATCCAGCAGA TCGAGGTCCT CAAAGGGCCG CAGGGCGCGC TCTATGGCCG TAACGCGATC GCCGGGGCGA TCGTAATCAA GACCAAGCCG CCATCGGACA ATTTCGAAAC GAGCGCGACG ATCGGCTATG GCAACGGGAA TGCGTTCAAG GCACTTGGTT CCGTCAACAT TCCGATTGCG AAGGATGGGG TGTATCTGCG CGCGGGCGCA TTCCAGACGT CCAGGGACGG TTATTTCTTC GATCGGACGA CGCAACGCGA TGTCGACCCG GCAAACGAGC GTGGCGTCCG AGCGCGCCTG GATATCGTTG CGATTCCGAA CCTGTCCGTG AGCCTCCGAG GGAGCATGTC CAGGTTCATT GGGGCGGGCA TCAATTATCA CGCCCAACTC GGGGCTCTCG ACACGAACGA TGCGACCCAG CCCTTCGTCA CCAACGTCAT CGGCCGTGAT CGACAGAGGA AGCGGAGCGC GAGCGGCGTC TTTGATTACG ACCTGGGTTC GGGGCATGTC GTCTTCACGC CCGCCTATTC CTATGTGCAC GAGTCGGTTT ACGGCGACGG ATTTCCTTAT GCGGCGACCG CGGATACGAC ACAGCGTATC GAGTTCGTCG TGCGCACCAA GAGCGCCGAG CTCAAATATA TATCCCCGCA GGACAGGGCG TTCAGCTATA TCGTTGGAGG CTATTGGGCG AGCATCTTCC GCCGCGATAC CACGACACAG GGCATCGACA CGGGGCAGGG CGTGATCGAT GGCCGGGGGC CGTTCCCGGC GGGCAGCATC AATCCCACGC TCTCGATCCA GGACGATGGC TACCGCTACC GAGTTCTGGC GGGCTTTGGC CAAGCGAACC TGAAGCTCGG CGAGCGGGTC AATTTGTCGG GAGCGATCCG CTACGACGAT GAGCGGAGAA GGCAGACGAA CCTCTCGCCA CCGTCCTTCT CGCAATATAG CGGGCAGGTG CGTCGAAAGA CCTTCAAGGG CATCGAACCG AAAGTCACCC TCAGCTACCA ACCTTCGTCG TTCGTCAACG TCTATGCCGA TTATGGCCAG GGATTTGTCA GCGGCGGATT CAATCCCGCG CAGACCCGAG ATCTGGTGGT CGCGGCGGAT CCGAACGCCA CCGTCCCGAA CGAATATGGG AAGCAGATCA ATCGGGCCGC CGAGATCGGC GTGAAATTGC GACTTTTCGA CAATCGCGTC ACCGTCAACG CGGCGGCGTT CCACAGCAAG GTGCGCAACT TACAGCAGTT CCAATTTTTC CCGGCCGCCA CGCTCCAGGC GATCAATCCG ATCGACAAGA CCAAGATCGA TGGCGCCGAG TTCGACACCA CGACCAGATT GGGCCCCGTG ACGATCTTTG CGGGCGCCGG TTACACCAAC GCTCGTATCG CCGCATATTC CGCCAACAGA TCCTATCTGG GCAACAAGGT CCCCGGCGTT CCGAAATATA CCATCAACGC TGGAGCGCAA TATGACGTTA CGCTCGGCTC CGATCTGAGC GCCAACGCGC GGATCGATTA TCAGCGGATC GGACCGCAGT GGTTCGACAT TGCCAATACC TTTGGGACCA GGCGATCGGC GGTCAACCTG TTCGACGCTC GGATCAACCT CGTCCACGAT CGTTGGACCT TCTCCGTTTT CAGCAAGAAT ATATTCGACA AGCGATACAA TGCGGAAGCG GTCGTCATTT TTCCCACCGC CCAGGCCGTC ACGCCGGCAT TGCCGCGGAC GTTCGGGGCC GAACTCAAAG TCGCTTTCAA ATAG
|
Protein sequence | MRYGKCGSSN VFRAFLLLTT ACAASAAMAQ NSSGPEASVP APSGASAENA EPGPQDIIVT GRRRSESAFN APVAVSVLTS GAIESSGVAR PVDVTRFVPN MNITSVGRAG ENFVTLRGLA QARSADSIVA VIVDGVQLAS AEELSQELFD IQQIEVLKGP QGALYGRNAI AGAIVIKTKP PSDNFETSAT IGYGNGNAFK ALGSVNIPIA KDGVYLRAGA FQTSRDGYFF DRTTQRDVDP ANERGVRARL DIVAIPNLSV SLRGSMSRFI GAGINYHAQL GALDTNDATQ PFVTNVIGRD RQRKRSASGV FDYDLGSGHV VFTPAYSYVH ESVYGDGFPY AATADTTQRI EFVVRTKSAE LKYISPQDRA FSYIVGGYWA SIFRRDTTTQ GIDTGQGVID GRGPFPAGSI NPTLSIQDDG YRYRVLAGFG QANLKLGERV NLSGAIRYDD ERRRQTNLSP PSFSQYSGQV RRKTFKGIEP KVTLSYQPSS FVNVYADYGQ GFVSGGFNPA QTRDLVVAAD PNATVPNEYG KQINRAAEIG VKLRLFDNRV TVNAAAFHSK VRNLQQFQFF PAATLQAINP IDKTKIDGAE FDTTTRLGPV TIFAGAGYTN ARIAAYSANR SYLGNKVPGV PKYTINAGAQ YDVTLGSDLS ANARIDYQRI GPQWFDIANT FGTRRSAVNL FDARINLVHD RWTFSVFSKN IFDKRYNAEA VVIFPTAQAV TPALPRTFGA ELKVAFK
|
| |