Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4140 |
Symbol | |
ID | 5198493 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 4547725 |
End bp | 4549926 |
Gene Length | 2202 bp |
Protein Length | 733 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640583694 |
Product | TonB-dependent receptor |
Protein accession | YP_001264618 |
Protein GI | 148557036 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGTGAGA ATGATGATTT CCGGAGGATG TTGAGAAGTT CGCTGGTCGC GGGAATCTCT GGCGTCCTCA TCTGCGCCGG CTCGCCGACG CTCGCCCAGG CGGCCACGGC ATCGTCGGAT GAAGGCCAAG CGCGGGCGAG CGATGGCAGT CAACTCGGCG ATATCGTCGT CACGGCCCAG CGGCGCAGCC GCGCCGAAAC GGCGCAGCGC GTGCCCATCG CGATCACCGC CGTGTCGGGC CGGCAGCTCG AGGAGATGCA TGCGCTCACC CTGACCGACG TTGGCCGGGT GGCGCCGAAT GTCTCGTTGA CGCCGAGCGG CACCTTTCCG GGGACGGCCA ATTTCCTCAT CCGCGGCATT GGCGTCAACA CCAGCGATCC CTCGGCCGAG CCAGCGGTCG GCGTGTTCGT CGACGGCATG TATTATGGCG TGAACCTGGG CGTAGTGACC GATGCCTTCG ATCTGGAGTC GGTCGAGATA TTGCGCGGCC CGCAGGGGAC GCTTTTTGGC CGCAATGTGA CCGGCGGCGC CGTCGTTATG CGGAGCCGCC GCCCGAGCGG CGAGTTCGGC CTTCAGGGCA AGGTCAGCTA TGGCAATTTC AACCAGATCA GCGGTGCCGC GTCGGTCGAG GGGCCATTGA TCAAGGACGT GCTGAACGCG AAGGTCGCGA TCATGTCCAA TAGCAACAAC GGGTTGTTCG CGAACGCCGC CAATCCCGGC AATCGCATCG GGCGACACAA TGATCTGATC GTCCGCCCGA TAATGGAGTT CAAGCCAAGC GACCGGCTGA CGCTGACGCT GATCGGGGAG ATCGGCCGGA TGGACGATTA TGGGACGCCG TCGATCAACG TCTTCAACAA TGCCGGCGCG CCGATCCCTT CGGGCAAGTT CATTCTGTCG AGCGATTTCG ACGCGCACAG CCAGCAGCGC TGGAAGCATG TCATCCTTGA GGGGGCCTAC GAAGTCCCCA ATGGCACGAT CAAGGCGACC TTGACCGCGC GGAAGATCAG GACGTCTTTC GAGACCGACG TCGATGCGAG CTCCGCGCAG ATATTCTCGT TCGTCGCGCC GACCGGGCTC CACCAGCATC AGAAATCCGC CGAGATCATC TATAACGGCA AGTTCGGAGA TTATTTCGAA CTGACCGCCG GCGGAAATTA TTTCCAGCAG ATGGCGAATT ATTCCGAGGC CAGAAGCCTT AACGGCGGGG CCTCGCGTCC AGTCAGCGAC GGAATCCTTC ATCAGAAGAC CGGCGGAGTC TTCGCGCAGG GCGATGCGCA TTTCGGCACC GTGACGATCA CGGCAGGCGG CCGCTACACG ATCGACCACA AGGCGGTGAT GACCGCGGCG CTCGGCGGGT GCAGCCTGGA CGGCACGGTC TGCAACTATG CGTTCAGCAA TGCCCACACC TGGCGCGATT TCACGCCGAA GGCCGGCATT CGCTGGCAGC CGACCAACGC GCTGCAGTTC TATTTCACCT ATACGAAAGG CTTCCGCGGC GGGGGATATG GTCTGCGGAA CTCGCCTGGC GTGCTGCCCG GGCCGTATAA TCCCGAGAAG GTCGACGCTT ATGAGGTCGG CGCCAAATCG GAATGGTTCG ATCGTCGGCT TCGCGTCAAC ATGGCGCTGT ACCGCAACAC CTATGACGAC CTGCAGCGGC TGGTTCAGGA TTTCAATCTG GTGCAGCGCA CGCTCAACGC GGCATCGGCG CGGATCCAGG GCGCCGAGAT CGAGATCGCC GCCATACCGG TCCGCAATCT GACGTTGAGC GGTTCGGTCG GCTATACCGA TGCCAAATAT CTGGCGTTCA ACAATCTGGA TTTGACCGGT GACAAGGTGC CCGATCCCCT GCTCGCCAAG CGGCTCCTTC TGTCGCAGGC GCCCAAGTGG AACTATAATC TGACAGCCAG TTACGACGTT CCGATCGGTG ATGCCGGCAA GCTGAACTTC CGGGGCAATT ACTATCACCT CGGAAAGCGC GCGAACGATG ATCTAAACAA GGCGATCCTA CCGTCCTACG GCCTGCTAGA CGCCAGCGTC AGCTGGTCGT CCGCGGACGA CCGCTACAAG ATATCGGTGT TCGGAAAGAA TCTGGCCAAC AAGCTGGCCT ATGCCAATGG CGGCACGGTG AGTTCGACTT TCGAGTCTCT CCCGCTGTTG CCGCCGCGCC GATATGGCGT CGAAGTCTCC TTCAAGCTGT AA
|
Protein sequence | MRENDDFRRM LRSSLVAGIS GVLICAGSPT LAQAATASSD EGQARASDGS QLGDIVVTAQ RRSRAETAQR VPIAITAVSG RQLEEMHALT LTDVGRVAPN VSLTPSGTFP GTANFLIRGI GVNTSDPSAE PAVGVFVDGM YYGVNLGVVT DAFDLESVEI LRGPQGTLFG RNVTGGAVVM RSRRPSGEFG LQGKVSYGNF NQISGAASVE GPLIKDVLNA KVAIMSNSNN GLFANAANPG NRIGRHNDLI VRPIMEFKPS DRLTLTLIGE IGRMDDYGTP SINVFNNAGA PIPSGKFILS SDFDAHSQQR WKHVILEGAY EVPNGTIKAT LTARKIRTSF ETDVDASSAQ IFSFVAPTGL HQHQKSAEII YNGKFGDYFE LTAGGNYFQQ MANYSEARSL NGGASRPVSD GILHQKTGGV FAQGDAHFGT VTITAGGRYT IDHKAVMTAA LGGCSLDGTV CNYAFSNAHT WRDFTPKAGI RWQPTNALQF YFTYTKGFRG GGYGLRNSPG VLPGPYNPEK VDAYEVGAKS EWFDRRLRVN MALYRNTYDD LQRLVQDFNL VQRTLNAASA RIQGAEIEIA AIPVRNLTLS GSVGYTDAKY LAFNNLDLTG DKVPDPLLAK RLLLSQAPKW NYNLTASYDV PIGDAGKLNF RGNYYHLGKR ANDDLNKAIL PSYGLLDASV SWSSADDRYK ISVFGKNLAN KLAYANGGTV SSTFESLPLL PPRRYGVEVS FKL
|
| |