Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4129 |
Symbol | |
ID | 5196503 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 4533191 |
End bp | 4535494 |
Gene Length | 2304 bp |
Protein Length | 767 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640583684 |
Product | TonB-dependent receptor |
Protein accession | YP_001264608 |
Protein GI | 148557026 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.108935 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGAAACA GGCAAGATCA CATCGGCATA TCGGGCTTGG CGCTCATGGC CGCGCTCGTC TGTCCGGGGG CGGCCCATGC GGCCGAGGGC GGCGCGGGCG ACGCCGCGGA GATCGTCGTG ACCGCGCAGA AGCGCGAGCA GCGCGTCAAC GAGGTCCCGA TGTCGATCAG CGCGCTGAGC GGCAAGGAGC TGGCCGACAA GGGCATCGTC AAGCCGGGCG ACCTGGAAAA GAGCGTGCCG GGCTTCAGCT ACACCGTCAG CGGCTATCAG ACGCCGGTCT ACATCCTGCG CGGCGTCGGC TATTTCGAAT CCTCGCTCGC GGCCGATCCG GCCGTGTCGG TCTATGTCGA CGAGGTCAGC CTTCCCTATT CGGCGATGAC GATCGGCGCC GGGCTCGACC TCGAGCGTGT CGAGGTCCTC AAGGGGCCGC AGGGCATCCT GTTCGGACGC AATTCGACCG GCGGCGCGAT CAACTATGTC GCGGCCAGGC CCACGGCGGA GTTCGGCGCG GGGATGCGGG CGAGCTACCG CCGCTTCGGC GAGGTGGAGC TGGAGGGCCA TGTCACGGGA CCGATCAGCG ACACGCTCCG GGTCCGCGTC GCCGCCCGCA CCGATCAGGG CGGGGACTGG CAGCGCAGCT ATACCCGGCG CGACAGCCTG GGCGCCAAGG ACCTGCTGGT CGGCCGCGCG ATCGTCGAGT GGGCGCCGTC CGCGGCCTTC ACGGCGCAGC TCAACGTCAA CGGCTGGCGC GACCGGTCGG ACAACCAGGC GCCGCAGCTG GTCGCGCTGA TCCCCAAGAC GCCGGCCAAC ATTCCCGACG TCCCCGGCAC CTTCCTCTAT CCGCTCGCGC CCGCGAACGA TCGCGCGGCG GACTGGAACG CCGGGCGCAG CCTCAGGAAC GACAACTCGC TCTGGCAGAC CTCGCTGCGG CTGGGCTACG ACCTGTCGTC CGACATTTCG CTCACCTCGA TCACCAGCTA TGCCGACTAT TCGCGCTATG CGCCGATCGA CCAGGACGGC TCGACGCTCA ACATCATCGA CAGCCTCGAC GTCGGCGGCA TCAAGTCCTT CTTCCAGGAG CTGCGCCTGT CGGGAAAGAC CGACGCGCTG ACCTGGGTGT TCGGCGGCAA TTACGAGCGC GACCGCATCT CCGAGCGGCT GACCTCCTTC CTCGGCGATT CGACCGGCGG GAAGATCGCG GGCGTCCGCT ACAACGGCGC GCAGGCGAAC AACGTCCAGA TCGCCAGGAC CTACGCGCTG TTCGGCAACG CCGAATATGA GATCATGCCC GGCCTCAGCA TCCAGGGCGG CGCCCGCTAC ACCAAGGCGG ACCGGAGCTT CGACGGCTGC AGCGGCGACG TCGGCGACGG CCGGTTCGCG GCGGCGTTCG TCGCGCTGCA GACCGCGCTG AAAGGCGGCA GGTCGCCCGT CGTCCCGATC GCGCCTGGCG AATGCACCAG CCTCGACGCC AATCTCGATC CGGCGCGGCT TGTGACCAAT TTCAACCAGG ACAATATCTC CTGGCGCGCG GGCCTGAGCT GGAAGGGGGA GGGCGGCCTG CTCCTCTACG CCAATGTCAG CCAGGGCTAC AAAGCCGGCG GCTTCCCCAC GACCACGGCC GCGACGCTGA CCCAGTTCAC CCCGGTGTCG CAGGAAAAGG TCGTCGCCTA TGAGGCGGGC TTCAAGGTGC CGTTGTGGGA TCGCAAGATC CAGTGGAACG GCGCGATCTT CCGCATGGAC TATACCGACA AGCAGGTGCG CGGGATCATC CCCGATCCGG TCCTGCGGAC CGTGCAGGCG CTCGTCAACG TGCCGAAGTC GAAGATCGAG GGGGCTGAGG GCCAGGTGCA CATCCGCCCG ACGCGCGGGC TCGATCTCGA TTTCTCGGGC ACCTATCTGC ACACGCGGGT CGACGACTTC ATCGGTCTCG ACGTGTTCGG CCTCCAGCGC AATTTCGACG GCTCTCGCCT GCCATATACG CCGAAATGGC AAGCGGTGGC GGACGCGCGC TACGCATGGC CGGTCGGCGA CCGCCTGTCG GCCTTCGTCG GCGGGCACCT GACCTATCAC AGCGGCACCA ACGCCCAGCT CGGCGGCGTG CCGGTGGTAG CCATCCGCGC CTATACGCTG GTCGATCTCA ACGCCGGCAT CGAGAGCGCC GACGGCCGCT GGAAGGCGAT GTTGTTCGGC GAGAACGTGA CCAACAAATA TTATTGGAAC TCCGCCAACA GCATCAGCGA CGTGGTGGTC CGTTATGCGG GCATGCCGGC GCGCTACGGC GTCAGCTTCA GCTTCCAATA TTGA
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Protein sequence | MRNRQDHIGI SGLALMAALV CPGAAHAAEG GAGDAAEIVV TAQKREQRVN EVPMSISALS GKELADKGIV KPGDLEKSVP GFSYTVSGYQ TPVYILRGVG YFESSLAADP AVSVYVDEVS LPYSAMTIGA GLDLERVEVL KGPQGILFGR NSTGGAINYV AARPTAEFGA GMRASYRRFG EVELEGHVTG PISDTLRVRV AARTDQGGDW QRSYTRRDSL GAKDLLVGRA IVEWAPSAAF TAQLNVNGWR DRSDNQAPQL VALIPKTPAN IPDVPGTFLY PLAPANDRAA DWNAGRSLRN DNSLWQTSLR LGYDLSSDIS LTSITSYADY SRYAPIDQDG STLNIIDSLD VGGIKSFFQE LRLSGKTDAL TWVFGGNYER DRISERLTSF LGDSTGGKIA GVRYNGAQAN NVQIARTYAL FGNAEYEIMP GLSIQGGARY TKADRSFDGC SGDVGDGRFA AAFVALQTAL KGGRSPVVPI APGECTSLDA NLDPARLVTN FNQDNISWRA GLSWKGEGGL LLYANVSQGY KAGGFPTTTA ATLTQFTPVS QEKVVAYEAG FKVPLWDRKI QWNGAIFRMD YTDKQVRGII PDPVLRTVQA LVNVPKSKIE GAEGQVHIRP TRGLDLDFSG TYLHTRVDDF IGLDVFGLQR NFDGSRLPYT PKWQAVADAR YAWPVGDRLS AFVGGHLTYH SGTNAQLGGV PVVAIRAYTL VDLNAGIESA DGRWKAMLFG ENVTNKYYWN SANSISDVVV RYAGMPARYG VSFSFQY
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