| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4107 |
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| Symbol | |
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| ID | 5199306 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 4512321 |
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| End bp | 4513979 |
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| Gene Length | 1659 bp |
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| Protein Length | 552 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 640583663 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001264588 |
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| Protein GI | 148557006 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGAATGA AGCGCGGACG GGTCGCCATC GCCGCGGGGC TGCTGCTGGC CTGGCCGGCC
ATGGCCCCCG CCATGGTCAA CGACGCCTCG GCGGAGATGC GGCAATATGT CCACGCCCGG
CTCGCCGATG CCGCCGGCAT GCCCGAAGCG GCCGCTGCCA GCTATGCGCG CCTGCTCCAG
GCGTCGCCGC AGGACAAGCG GCTGGCGCTG CGCACCTATC GCCAGGCGTT GACCGCGGGC
AATTACAAGC TCGCCGGGCT CGCCACCGCG CAGCTCGACC GGCTCGGCGC CCTGCCCCCC
GACGGCACGC TGTTGCTGTT CGCCGAGGCG GTCACCGCGC ACGACTGGAA GCGCGCCAAT
GCGACGATCG GGCGGATCGA GCGCGAACAG GTGTTCGGCT TCCTCGCGCC GGTGATGCGC
GGCTGGGTCG CCTATGGCCG CCAGTCGTCG GACGCCGCCC GGCTCGCCGC GCCGGCCGGC
GGCTCGCAGC TTTCGAACGC CTATTCGCGC GACCATTATA TGCTGATCGC GCTGGCGATG
GGCCGCCATG AGGTGCTGGC CGACCTGCGG CGGCTGATCG CGGCGCACGA CGTGCGCTCG
CTGCGCCTTC AGCTCGCCGC CGCGGCGCTG CTCGCCAAGC GCGGCGACAT GGCCGATGCC
CGCGCCATCC TCGACGGCCA GACGCCCGAG CTGATCCAGG CCCGCGCCAC GCTCGACGCC
GGCAAGCCGC TCGGCGGCGC GATCGACACG CCCGAGCTGG GCCTGTCCGA CCTGTTCGCG
CAGCTCGCGA TCGACGTGAA GGGCGACGGC CGCTCCCCCG TCTCGCTGCA ACTCGCCCGC
ATCGCCGGCT ATCTGGCGCC GACCAACGCC GCGGCGATCA TCGCCACCGC CGACCTGCTG
ACCGCCAACG GCTATCATGA CGCGGCGCTC GCCCTGCTCG ACAAGGTGCC CGCCGACGAT
CCGCTCCGCG AAGCCGCGCG GCAGGAACGC AGCGGCATCC TGCTGTCGAT GGGCAATCGC
CAGGCCGCGC TCGCCGATGC GCAGAAGGCC GCCGCGCAAC CCGATGCCAG CGCCGCGACC
CTGGTCGAGC TGGGCGGCAT CCTTTCCGAT CTCGACCGCC CGGCCGAAGC GGTGAAGGCC
TATCAGCGCG CGATCGACAT CGATACGGCG CAGGGTATCC CGAACTGGGC GCATCTGTTC
CTGCAGGCGG GCGCGCTCGA CCGCGCCGGC GACTGGGAGG GCGCCAAGGA CCGGCTGCGC
CAGGCCGGCA AGCTGGCGCC GGGCCAGGCG GTGATCCTCA ACTATCTCGG CTATGGCATG
CTCGATCGCG GCGAGAACCT GCCCGAGGCG CAGGCCTATA TCGAGCGCGC GAGCAGCCTC
GATCCCAACG ACGCGGCGAT CGCCGATTCG CTCGGCTGGC TCTATTACAA GCGCGGCAAC
TATCCGGGCG CGATCGCCGC CCTCGAACGC GCGGTGGCGG GCGAGCCGGG CCAGTCGGTG
ATCAACGAGC ATCTCGGCGA CGCCTATTGG GCGGTCGGCC GGCGGATCGA GGCGCGCTAC
GCCTGGCGCG CGGCGCTGGT CCAGGCCGGC AAGACCGACA GCGAGCGGAT CAAGCGCAAG
ATGGCCGACG GCCCCGGCGA CCGGCTCAGC GCGAACTGA
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| Protein sequence | MGMKRGRVAI AAGLLLAWPA MAPAMVNDAS AEMRQYVHAR LADAAGMPEA AAASYARLLQ
ASPQDKRLAL RTYRQALTAG NYKLAGLATA QLDRLGALPP DGTLLLFAEA VTAHDWKRAN
ATIGRIEREQ VFGFLAPVMR GWVAYGRQSS DAARLAAPAG GSQLSNAYSR DHYMLIALAM
GRHEVLADLR RLIAAHDVRS LRLQLAAAAL LAKRGDMADA RAILDGQTPE LIQARATLDA
GKPLGGAIDT PELGLSDLFA QLAIDVKGDG RSPVSLQLAR IAGYLAPTNA AAIIATADLL
TANGYHDAAL ALLDKVPADD PLREAARQER SGILLSMGNR QAALADAQKA AAQPDASAAT
LVELGGILSD LDRPAEAVKA YQRAIDIDTA QGIPNWAHLF LQAGALDRAG DWEGAKDRLR
QAGKLAPGQA VILNYLGYGM LDRGENLPEA QAYIERASSL DPNDAAIADS LGWLYYKRGN
YPGAIAALER AVAGEPGQSV INEHLGDAYW AVGRRIEARY AWRAALVQAG KTDSERIKRK
MADGPGDRLS AN
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