| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4098 |
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| Symbol | |
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| ID | 5196459 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 4501832 |
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| End bp | 4503604 |
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| Gene Length | 1773 bp |
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| Protein Length | 590 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 640583654 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_001264579 |
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| Protein GI | 148556997 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGCGTA GATATCTGCT TGCCGGCGCG ATCGCCCTCG CCCCCTTCAC CGCCGCCGCC
CAGAATGCGG TGGCCGTGCC CGCTGCCGCG GTCGGCCTCG CCGCCGCCGC CCAACCGCTG
CCGATCGTGT CGGGCCTCAC CGCCGACCAG CGCACCGCCT ATCGCACGAT CTTCGCCGCG
ATCCGGTCCG GCGACTGGAG CGCCGCCCAG GCCGGCATCG ACGCGATCCC GACCGGACCG
CTCAGCAACG TCGCCGAAGC CGAGTTGATC CTCGCCAAGG GATCGCCGCG TATCTCGGAC
GATCAGCTCA TCCAGCTCGT CGCCACCGCG CCCGATCTGC CGCAGGCCGC CCAGCTCGCC
GGCCTCGCCT CCCGCCGCGG CCTCACCACG GCGGCGCTGC CGGTCACCCG CGATCTCGTC
CGCTACGCCG GCCCCTCGAA GCGCCAGTCG GCCCGCTCGC TGCGCAGCGA CCGGGCCGCC
GCCGCGCTCG CGCAGGTCGC GACGCCGCTG CTGCGCGACG ACCGGCCGAG CGAGGCCGAG
GCGCTGGTCG TCGATCGCCT GGGCCAGCTC TCGGCCGAGG CGCAGACCGA ATGGCTGCAG
CGCGTCTCCT GGGCCTATTA TCTGTCGGGC GACGACGCCT CCGCGCGCCG CGTCGCCGAT
CAGGCGCGGC CCGGCGCTGG CGACTGGGCG GTGCAGGCGA GTTGGGTCTC GGGCCTCGCC
GCCTGGCGGC AGCATGACTG CCAGTCCGCC GGCACCGCCT TCGAGGAGGT CGCCGGCCGC
GCCCGCGATC CGGAGATGAC CGCCGCCGGC CTCTATTGGG CGAGCCGCGC CGACATGGCC
TGCGGCCATC CCGAGCGGAT CGAGCCGCGC CTGCGCTCCG CCGCGCGGAT GAAGGAGAGC
TTCTACGGCC TGATCGCGCA GGCCGCGCTG GGCATCGCCG ACGAGAGCGG CACGAGCATG
AAGCTCACCG CCAACGACTG GGCGTCGATC GGCGCGATCG CCAATGTCCG CCGCGCCACC
GCGCTGGCCG AGATCGGCGA GACCGGCCTC GCCGAGGAGA TGCTCCGCCA CCAGGCGAAG
ATCGGCCTCA GCCGCGACCA TGAATCGCTG ATCCACCTCG CCGCCCGGCT CGACCTTCCG
GCCGCGCAGA TCTGGCTGGC GCAGAACGGC CCGTCGGGCG CCCAGCTCTC GGCCGCCGCG
CGCTATCCGA TGCCCGCCTG GACCCCGGCC TCGGGCTGGC AGGTCGACAA GGCGCTGGTC
TTCGCCCACG CGCTCCAGGA ATCGCGCTTC AAGACCGACG CGGTCAGCTC GGCCGGCGCG
CGCGGGGTGA TGCAGCTCAT GCCCGCCACC GCGCAGATGG TCGCGCGCCA CCTCGGCCGC
ACCGTCGATC CGGCGTCGCT GTTCCAGCCC GCGACCAGCA TCGACCTCGG CCAGGCCTAT
CTGCGCGAAC TGGCCGACAA TAGCGGCACC GGCGGGCTGC TGCCCAAGGT GATCGCCGCC
TACAACGCCG GGCCCGGCTC GGTCGCCAAC TGGAACGCGC GCGGCCGCAG CCTCGACGAC
CCGCTGCTGT TCATCGAATC GATCCCCTTC GCCGAGACCC GCGCCTATGT CGCGGTCGTG
CTGCGCAACT ACTGGATGTA CCAGCGGCAC AGCGGCGCCA AGGCCGCCAG CCTGACCGCG
ATCTCGCAGG GCCTGTGGCC GCGCTTCCCC GGCATGCCCG GCCGCGACGC CGTCCGCCTT
ACCGCGCTGG GCGCGACGGC GGCGGCGGAC TGA
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| Protein sequence | MMRRYLLAGA IALAPFTAAA QNAVAVPAAA VGLAAAAQPL PIVSGLTADQ RTAYRTIFAA
IRSGDWSAAQ AGIDAIPTGP LSNVAEAELI LAKGSPRISD DQLIQLVATA PDLPQAAQLA
GLASRRGLTT AALPVTRDLV RYAGPSKRQS ARSLRSDRAA AALAQVATPL LRDDRPSEAE
ALVVDRLGQL SAEAQTEWLQ RVSWAYYLSG DDASARRVAD QARPGAGDWA VQASWVSGLA
AWRQHDCQSA GTAFEEVAGR ARDPEMTAAG LYWASRADMA CGHPERIEPR LRSAARMKES
FYGLIAQAAL GIADESGTSM KLTANDWASI GAIANVRRAT ALAEIGETGL AEEMLRHQAK
IGLSRDHESL IHLAARLDLP AAQIWLAQNG PSGAQLSAAA RYPMPAWTPA SGWQVDKALV
FAHALQESRF KTDAVSSAGA RGVMQLMPAT AQMVARHLGR TVDPASLFQP ATSIDLGQAY
LRELADNSGT GGLLPKVIAA YNAGPGSVAN WNARGRSLDD PLLFIESIPF AETRAYVAVV
LRNYWMYQRH SGAKAASLTA ISQGLWPRFP GMPGRDAVRL TALGATAAAD
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