Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4088 |
Symbol | |
ID | 5198925 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 4489779 |
End bp | 4492223 |
Gene Length | 2445 bp |
Protein Length | 814 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640583644 |
Product | TonB-dependent receptor |
Protein accession | YP_001264569 |
Protein GI | 148556987 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0165324 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.80601 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAAAC TGCTCCTGGC GAGCGCCGCA CTGGCCGGCC TCACCACTCC GCTCCATGCG CAGGACGCGC CGCCTGCGGC CGACGACGCC GCGCAGTTCG AATCGCCGCG CGCGAACAGC GAGATCATCG TCACCGCGCG CCGCCGGCAG GAGACCGCGC AGGAAGTGCC GCTGGCGATC TCGGTGGTCG GCGCCAACCA GATCGAGAGC ACCGGCAACT TCAACATCCT GAAGCTGCAG CAGCTCGCGC CGACGCTGCA GGTCTATTCG TCCAACCCGC GCAACACCTC GGTCAACATC CGCGGCCTCG GCGTTCCGTT CGGCCTGACC AGCGACGGCT TCGAGCAGGG CGTCGGCATC TATGTCGACG ACGTCTACAA CTCGCGCGTC GCCGCCGCCG TGTTCGATTT CCTCGACGTG AACCAGGTCG AGGTGCTGCG CGGTCCGCAG GGCACGCTCT ACGGCAAGAA CACCACCGCC GGCGCCATCA ACATCACCAC CAACCAGCCG ACCTTCGATT TCGAGGGCCG CGCCGAGGTG ACGGCCGGCA ACCTGGAGTT CAAGCAGGCC AAGGCCGCCG TGTCGGGTCC GCTGTCCGAC AAGGTCGCGG TGCGCGTCGC CGGTGGCGTG ACCTCGCGCC GCGGCACGCT CTACAACGTC ACCACCGGGC AATATATCAA CGAGCAGGAC AATCTCGGCG TGCGCGGCAC CCTGTTGTTC AAGCCCAGCG ACGACCTCAA GATCACCCTG TCGGGCGACT ACAGCAAGCA GGACCCCCTG GGCTACGGCA CCACCTTCGT CCGCGTCGGC CGGACCCAGC GCGCCCTCTC CCGCCAATAT GACGCGCTCG TCGCCGCCGC CAACGCCGCC GGCCGCAATT ATCAGGTGCC GAGCCGCAAT CCCTATGACC GCCTGACCGA TCTCGACTCC AGCCTCAATG CCGGCAACAA GATCGGCGGC GTGTCGCTCA AGGCGGTCTG GGATGCCGGC ATCGGCACCT TCACCTCGAT CACCGCCTGG CGCTTCTGGG ATTGGAAGCC GGAGAACGAC CGCGACTTCA CCGGCCTGTC GGTCGTCGCC AAGTCGCAGA ACCCGTCGCA GCAGGATCAG TACAGCCAGG AATTCCGCTA TAATTACGAG GGCGAGAAGA TCGACTTCGT CGTCGGCCTG TTCGGCTTCA AGCAGCGCAT CGACACCCAG GGCACCGAAT CCCAGGGCAT CGACGCCAGC CGCTGGAGCC TCACCGGCGC CCAGGCGAAC GATCCGAGCA TCCTCGACGG CCTGACCGCC ACCAACACGC AATATCTCAA GAGCACCAGC GCGGCGGCCT TCGGCCAGCT CGCCTGGAAG GTGACCGACG CCCTGACCAT CCAGCCGGGC GTCCGCCTGA ACTACGACAA GAAGAGCGGC TTCTATGAGC GCGTCGTCAC CAACGGCGCG GGCCAGGTGA TCAGCTGCAC CCCGGCTCCG GCGGCGGGCA CCGCCCTGGC GGCCCAGTGC GGCGTGTATC AGCCGCAGTC GACCAGCCCG TCGGTGAGCA AGTGGAACTT CAGCTATGAT CTGAACGTGA ACTACAAGTT CGCGCCCGGC ATCCTCGGCT ACGCCACCTA TGCGAAGAGC TTCAAGACCG TCGGCATCAA CCAGAACGGC CTGCCGCTCA CCGCGGCCAA CGTGCCCGAT CTCTCGGCGA GCACGGTGAA GCCGGAATCG GTCCATCACT TCGAAGTCGG CCTCAAGACC CAGTTCTGGG ATCGCAGGGC CACCTTCAAC ATCAGCGCCT TCCGCACCGA CATCAAGAAT TTCCAGGCGA CCGTGAACGG CGGTCAGTTC GGCACGGTGC GCGGCTATCT CGCCAACGCC GGCAAGGTCC GGTCGCAGGG CGTCGAGACC GACTTCCGCA TCAATCCCAG CGAGCGCTTC CTCGCTTATG TGAGCGGCGC CTACACCGAC GCGAAGTACA AGAAGTTCGA CAACGCGCCC TGCCCGCCCG AGCTGTCGGG CGGCACGCTC CAGCCGGCGG GCGCCACGCC GGACTATTCG CAGCCGGGCG TCCCCGGTGC GCTCAGCCCG CGCCAGTGCG ACATCTCCGG CCAGCGCCTC CCCGGCGTCT CGCGCTGGTC CGCCTCCTTC GGCGCCGAGG CCAACATCCC GGTCGCGCTG CTGGCGAACG AGGGCCAGGC ATATATCGGC ACCGACGGCA ATTACCGCTC GCACTGGAAC TCGAACGCCT CGCCGTCGGT CTATACCGAG GTGAAGGGCT ATATCGTGAC CAACTTCCGC GCCGGCTTCC GCACCGAGCG GTTCGACGTC TTCGGCTGGG TCCGCAACGC CTTCGACAAG AAATATATCG ATCTGTTGCA GGTCGCCCCC GGCAATGTCG GCCTGATCGC CGGCACCCTC GGCGACCAGC GCACCTGGGG TGCGACCGTC AAGGCGAAGT TCTGA
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Protein sequence | MKKLLLASAA LAGLTTPLHA QDAPPAADDA AQFESPRANS EIIVTARRRQ ETAQEVPLAI SVVGANQIES TGNFNILKLQ QLAPTLQVYS SNPRNTSVNI RGLGVPFGLT SDGFEQGVGI YVDDVYNSRV AAAVFDFLDV NQVEVLRGPQ GTLYGKNTTA GAINITTNQP TFDFEGRAEV TAGNLEFKQA KAAVSGPLSD KVAVRVAGGV TSRRGTLYNV TTGQYINEQD NLGVRGTLLF KPSDDLKITL SGDYSKQDPL GYGTTFVRVG RTQRALSRQY DALVAAANAA GRNYQVPSRN PYDRLTDLDS SLNAGNKIGG VSLKAVWDAG IGTFTSITAW RFWDWKPEND RDFTGLSVVA KSQNPSQQDQ YSQEFRYNYE GEKIDFVVGL FGFKQRIDTQ GTESQGIDAS RWSLTGAQAN DPSILDGLTA TNTQYLKSTS AAAFGQLAWK VTDALTIQPG VRLNYDKKSG FYERVVTNGA GQVISCTPAP AAGTALAAQC GVYQPQSTSP SVSKWNFSYD LNVNYKFAPG ILGYATYAKS FKTVGINQNG LPLTAANVPD LSASTVKPES VHHFEVGLKT QFWDRRATFN ISAFRTDIKN FQATVNGGQF GTVRGYLANA GKVRSQGVET DFRINPSERF LAYVSGAYTD AKYKKFDNAP CPPELSGGTL QPAGATPDYS QPGVPGALSP RQCDISGQRL PGVSRWSASF GAEANIPVAL LANEGQAYIG TDGNYRSHWN SNASPSVYTE VKGYIVTNFR AGFRTERFDV FGWVRNAFDK KYIDLLQVAP GNVGLIAGTL GDQRTWGATV KAKF
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