| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4079 |
|---|
| Symbol | |
|---|
| ID | 5198936 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 4476642 |
|---|
| End bp | 4477526 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640583635 |
|---|
| Product | branched-chain amino acid aminotransferase |
|---|
| Protein accession | YP_001264560 |
|---|
| Protein GI | 148556978 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
|---|
| TIGRFAM ID | [TIGR01122] branched-chain amino acid aminotransferase, group I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 43 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.445103 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGAGG AAATAACGTT CGACGATCGC GACGGGTTCA TCTGGATGGA CGGGGCGCTG
GTCCCCTGGC GGGCGGCGAA CGTCCATGTC CTCACCCATG CGCTCCATTA TGCCTCGTCG
GTGTTCGAGG GGGTACGCGC CTATGAGGGC ACGATCTTCG AGCTGAGCCG GCACAGCCGC
CGGCTGCGCG AGAGCGCGCG GCTGCTGGGG TTCGAGCTGC CCTGGTCGGT CGAGGCGATC
GACGCGGCCT GCATCGAGAC GCTGGCGGCG AACGGGCTGA AGGACGCCTA TGTCCGCCCC
GTCGCGTGGC GCGGATCGGA GCAGATGGGG GTGTCGGCGA TCCGGACGCG GCCGCACCTG
GCGATCGCCT GCTGGGCGTG GGGCAGCTAT TTCGATCCCG ACGCGGCGGG GCTCAGGCTC
GACATCGCGC CGTGGCGCCG GCCGCCGCCC TATTGCGCGC CGGTGCAGGC CAAGGCGTCG
GGCCATTACA TGATCGCGAC CATGTCGAAG CACCATGCCG AGGGGCGCGG CTTCCACGAC
GCGCTGATGT TCGACCATCG CGGCCAGGTG GCGGAGGCGA CCGCGGCCAA TATCTTCTTC
GTCAAGGACG GCGCGCTGCA CACGCCGACG GCGGACTGCT TCCTGGACGG CATCACCCGC
CAGACGGTGA TCGGGCTGGC GCGGCGGCGC GGGATCGCGG TGGTCGAGCG CGCGATCTGG
CCCGAGGAGC TGGAGGGGTT CGAGCAGTGC TTCCTGACCG GATCGGCGGC GGAGATCGTC
GGCGTCGCCT CGATCGGGCC GTGGAGCTTC GAGACGGGCG ATCTCGGCCG GCAGATGCGC
AAGGACTATG CCGATCTGGT GCGCGGGCGG CTGGCGGCCG GCTGA
|
|---|
| Protein sequence | MAEEITFDDR DGFIWMDGAL VPWRAANVHV LTHALHYASS VFEGVRAYEG TIFELSRHSR
RLRESARLLG FELPWSVEAI DAACIETLAA NGLKDAYVRP VAWRGSEQMG VSAIRTRPHL
AIACWAWGSY FDPDAAGLRL DIAPWRRPPP YCAPVQAKAS GHYMIATMSK HHAEGRGFHD
ALMFDHRGQV AEATAANIFF VKDGALHTPT ADCFLDGITR QTVIGLARRR GIAVVERAIW
PEELEGFEQC FLTGSAAEIV GVASIGPWSF ETGDLGRQMR KDYADLVRGR LAAG
|
|---|
| |