| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4070 |
|---|
| Symbol | |
|---|
| ID | 5199259 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 4470131 |
|---|
| End bp | 4471288 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640583626 |
|---|
| Product | hemolysin-type calcium-binding region |
|---|
| Protein accession | YP_001264551 |
|---|
| Protein GI | 148556969 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.652273 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACCA TCACTGTCGC GGACGGCTAC GCCTTCGTCC ATCCGAAGCT CGATCTGTCG
CTCGCCTTCA CGGCCGACCT GACCGAGCGC CTGCCGACGG CGCTCCAGTT CGCGCTCAAC
GCCACCACCC AGCTCCGGCT GACCGGCGCG GCCATCGTCT ATGACCGCGG CGGCCATCCG
ACCGACGGCC TGATCACCGC CATCCAGGCC ACCGCCGACG GCGCGCCGGC CTTCACGCTG
ACCGATGCGC AGCTCGACCT GGGCGACCTC TTCGCGGCCG ATCCCGCGGC ACGCGCATCG
ACGGCGCGCA TCGCGCTTTT CGCCGGCGAT GACTCGATCA CCGGCGGCTC GAAGGACGAC
TATTTCAACG TCCAGGGCGG CCATGACGTC GTGATGGGCG GAGCGGGCTT CGACACGATC
TCCGGCGGCC CCGGCAACGA CCATCTCTAC GGGCAGTCCC CCGATGGCGG ACCCGACGGC
AGCGACATCA TCGAAGGCAA TGACGGGTCC GATTATATCC AGGGCAATGC CGGGAACGAC
GATCTTGACG GCGGCCTCGG TTCGGACCGC ATCAGCGGCG GCGCCGACAA CGACTATATC
TTCGGCGGCG AGGGCAACGA CACCGTCAAC GGCAACAAGG GCAACGATAT AATCGACGGT
TGGGACGGCA ATGATTTCCT GCGCGGCGGA CAGGGCAACG ACAATCTGAG AGGCGGGGCC
GGCTACAATG TGGTGATGGG CGATCTCGGC GACGACACGA TCGACGCCCA GACCGGCACC
GACACCCTGA CCGGCGGCGA AGGCGCCGAC CTCTTCATCA TGCGCTCCTT TGCCACCCCA
CCCGCCGACC GATCCGAGCT GAGCGTGATC ACCGACTTCA CCCATGGCGA GGACCGCATC
AAATTCAGCG GGATCATGGG AGCGGAAATC GAGACGGTAC TGAGCGGCAC CGCCGACTCT
TATGAGGCGG CGATCCAGCA GGCGAAGGCG ATGATGACCG CCCACGCCGG CTACAACGAG
ATCGCGGCGG TCCAGGTCGG TTCCGACACC TACCTCTTCA GCACCGGCAT GCCGTCGAGC
GACATCCCGA AGGACAGCGT GATGGCCCTC AACACCTTGG CGACCGATTT CGAGATCGGG
GATTTCGTTA TTAGGTGA
|
|---|
| Protein sequence | MTTITVADGY AFVHPKLDLS LAFTADLTER LPTALQFALN ATTQLRLTGA AIVYDRGGHP
TDGLITAIQA TADGAPAFTL TDAQLDLGDL FAADPAARAS TARIALFAGD DSITGGSKDD
YFNVQGGHDV VMGGAGFDTI SGGPGNDHLY GQSPDGGPDG SDIIEGNDGS DYIQGNAGND
DLDGGLGSDR ISGGADNDYI FGGEGNDTVN GNKGNDIIDG WDGNDFLRGG QGNDNLRGGA
GYNVVMGDLG DDTIDAQTGT DTLTGGEGAD LFIMRSFATP PADRSELSVI TDFTHGEDRI
KFSGIMGAEI ETVLSGTADS YEAAIQQAKA MMTAHAGYNE IAAVQVGSDT YLFSTGMPSS
DIPKDSVMAL NTLATDFEIG DFVIR
|
|---|
| |