Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4053 |
Symbol | |
ID | 5196410 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 4455717 |
End bp | 4456766 |
Gene Length | 1050 bp |
Protein Length | 349 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640583610 |
Product | secretion protein HlyD family protein |
Protein accession | YP_001264535 |
Protein GI | 148556953 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.861449 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGAGA TGCGATCGAT CACCGGCGAC GCCGGGGTCG CCGCGCCGGC CCTGGACGGC GAGCGGCGGC TGGGGCGGCT CGCGGCGATG CTGTCGGTGC CGGCGCTGCT GCTCGCGACC GGCCTCTATC TGTGGCTCAC CGGCGGCCGG ACCGTCTCGA CCGACAATGC CCAGGTCAAC GCCCATGTCG TGGAGGTCAG CGCCGAGGTC GCCGGCCGCA TCACCGACGT CTATGTGAGC GAGAACCAGC TCGTGAAGAA GGGCGACCTG CTCTTCCGCG TCGACCCCCA GCCCTATCGC ATCGCGCTGA TGCAGGCCGA GGCCGCGGTC GGCAATGCCG AGCTGACCGT CGCCCAGCTC GAGAGCACCT ATCACGCCAA GCAGGCCGAC ACCGCCAAGA GCCTGTCGGA CGTCAGCCTC GCCCGCGACA CCTTCGCCCG GCAGCAGGAG CTGCTCGCGC GCGGCTTCAC CACCCGCGCC GCCTTCGACG CCGCCAAGGC CGCGCTCGCC GCCGCGCAGG CGCAGCAGGC CTCGGCCAGG TCCGAAGCCG AATCGGCGCG CGCCGTGATC GGGACGTCGC GCAACGGCGG CCACCCGCAG ATCGAGGCCG CGATCGCCGC GCGCGACAAG GCCGCGCTCG ACCTCGCCCG CACCGAGATC CGCGCGCCGA TCGAGGGCCG GATCAGCCAG GCCGACAAGC TCCAGCCCGG CACCATGGCG ATCCAGATGC TGCCGATGGT CAACGTCGTC AGCAACCAGG GCTATTGGAT CGACGCCAAT TTCAAGGAAA CCCAGCTCGA CAAGGTCCGC ATCGGCCAGC GCGCGGACAT CGAGCTCGAC GCCATTCCCG GCCGGACCAT CAAGGGCCAT GTGATCGGCA TCAACGCCGG CACCGGCTCG CAATTCTCCC TGCTGCCGCC GCAGAATGCG ACCGGCAACT GGGTGAAGGT CACCCAGCGC GTCCCCGTCC GCATCCAGAT CGACGACCGG CTCGACCGTC CGCTCGTCGC CGGCTGGAGC GCCCATGTCA CGGTACACGT CGCCGATTGA
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Protein sequence | MNEMRSITGD AGVAAPALDG ERRLGRLAAM LSVPALLLAT GLYLWLTGGR TVSTDNAQVN AHVVEVSAEV AGRITDVYVS ENQLVKKGDL LFRVDPQPYR IALMQAEAAV GNAELTVAQL ESTYHAKQAD TAKSLSDVSL ARDTFARQQE LLARGFTTRA AFDAAKAALA AAQAQQASAR SEAESARAVI GTSRNGGHPQ IEAAIAARDK AALDLARTEI RAPIEGRISQ ADKLQPGTMA IQMLPMVNVV SNQGYWIDAN FKETQLDKVR IGQRADIELD AIPGRTIKGH VIGINAGTGS QFSLLPPQNA TGNWVKVTQR VPVRIQIDDR LDRPLVAGWS AHVTVHVAD
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