| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4048 |
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| Symbol | |
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| ID | 5200870 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 4451246 |
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| End bp | 4453555 |
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| Gene Length | 2310 bp |
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| Protein Length | 769 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640583605 |
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| Product | RNAse R |
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| Protein accession | YP_001264530 |
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| Protein GI | 148556948 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTCATC CCAAGGCAGC CGGTCTTCCG ACCCGCGAAC AGATCATCGA CTTCATCACC
ACGTCGGAGG CACCCGCCGG CAAGCGCGAG ATCGCGCGCG CCTTCGGCCT GCAGGGCAAT
GAGAAGATCG CGCTCAAGGC GTTGCTCAAG GACATGGCCG ACGAGGGGCT GATCGACAGC
GCGCGGGGCC GCGCCTTCCA CAGGATGGGC GGCATCCCCA AGGTGACGGT GCTGCGGATC
ACCGACGTCA CCGACGAGGG CGTGCCGCTG GCGGTGCCCG AGACGTGGCA TGGCGAGAAT
GGCCCGCCGC CGCAGCTCCG CGTCCGCGAG ATACGGGCGC GCAAGGGCAG CGCGCTCGGC
GTCGGCGATC GCATCCTCGC GCGGACCGAG GAAGCCGGCA GCGGCTGGAT CGCGCACCCG
ATGAAGAAGC TGGCGCGCGG CGAGGCGCTG ATGCTCGGCA TCCTCCATCG CGACGGCGAC
CGGCTGTGGC TGCGCCCGGT CGACAAGCGC GAGAAGCGCG ACACGCTGGT GTCCGATGCG
GGCGACGCCG ATGCGGGCGA CCTCGTCCTC GCGGAGAGGG CGGGCCGGCC GCCGCGCATC
ACCGCGCGGG TGACCGAGCG GCTGGGCGAT CCCTTCGCGC CGCGATCGTT CAGCCTCGTC
GCGATCCACA AGCACGGCAT CCCCGACGTC TTTCCCGAGA CCGTGATCGA GGAGGCCGGG
CTCGTCACCC GGCTCGACCT GGGGGAGGGG CGCGAGGACC TGCGCGACCT GCCGATCGTC
GCGATCGACC CCGCCGACGC GCGCGACCAT GACGACGCGA TCTGGGCGAT GCCCGACGAC
GATCCGGGCA ATCCGGGCGG TTTCCGGGCG ATCGTCGCGA TCGCCGACGT GTCCTTCTAC
GTCCGTCCCG GATCGGCGCT CGACCGCGAG GCGAAGAAGC GCGGCAACAG CGTCTATTTT
CCCGACCGGG TCGTGCCGAT GCTGCCCGAG GCGCTGTCGG CCGACATCTG CTCGCTCAAG
CATGGCGAGG ACCGCGCGGC GATGGTCTGC CACCTGACGG TGAAGGCGAA CGGGACGCTG
GCGAACTGGC GCTTCGCCCG CGCCGTCGTC CGCATCGCCG CGAACATCGC CTATGAGGAC
GCGCAGGCGG CGATCGACGG CGCGCCGGTC GCGGGGACAT GGGACAAGGC GCTGGCCGAC
AGTGCGCTGA AGCCGCTCTG GGCCTGCTGG AAGGCGCTGG CCAGCGCGCG CGACGCGCGC
GAGCCGCTCG ACCTCGACCT GCCCGAGCGG CGGGTGGTGC TCGACGAGAA GGGCCGCATC
CTGTCGGTCG CGCCGCGCGA GCGGCTCGAC GCGCACCGGC TGGTCGAGGA TTACATGATC
GCGGCCAATG TCGCGGCGGC CAAGGCGCTG GAGGCGAAGA AGGCGCCGGT CATGTACCGC
GACCATGAGC CGCCGAGCCG CGAGAAGCTG GTCGCGCTCA AGGACTATCT GGCCACCTTC
GACATGGAGT TCGCGCTGGG GCAGGTGGTG CGCCCGGCCA CCTTCAACCA TATCCTGAAG
CGGATCACCG ACGACGCGAT CCGGCCGCAG ATCATGGAAC AGGTGCTGCG CAGCCAGACC
CAGGCCTATT ATGCGCCGCG CAACGCCGGC CATTTCGGCC TGGCGCTGGG CAGCTACGCG
CATTTCACCA GCCCGATCCG CCGCTATGCC GACCTGCTGG TCCACCGCTC GCTGGTCGGC
GCCTATGGGC TGGAGACGGG CAAGCCCCGG CTGGAGGGGC CGGGCCGCTC GGGCGACATC
GTGCCCCGGA CCGCGCTGAC CCAGGAGGAG GCCGAGCGGA TGACCCCGAT CGGCGAGCTG
ATCAGCCAGG CCGAGCGGCG CGCGATGGAG GCCGAGCGCG ATACCATCGA CCGCTATGTC
GCCGCTTTCC TGTCGACCAA GGTCGGCGAG CTGCTCGACA CCCGGATCAC CGGCGTCCAG
CCCTTCGGCT TCTTCGCGAC GGTCGAGGGG CTGGGCGGCG ACGGGCTGGT GCCGGTGTCG
ACCCTCGGCG CCGAGCGCTT CCATTATGAC GAAGGCGCGC AGGCGCTGGA GGGCGAGGAG
AGCGGCGACC GCTACACGCC GGGGATGAAG CTGCGGCTGC GGCTGGTCGA GGCCAACCCG
ATCAACGGCT CGCTGCGCTT CGAACTGGAG GAAGGGGCCA GCCACCTGCC GATGCGCGGA
CCGCGCGGCA CCCGCGGCCC CAAGCGGCCG ATGATGGGCC GCCGCGGCCG GCCCGCCAAT
ATCCGCCACA AGGGCGGGCG GCGGCGCTGA
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| Protein sequence | MRHPKAAGLP TREQIIDFIT TSEAPAGKRE IARAFGLQGN EKIALKALLK DMADEGLIDS
ARGRAFHRMG GIPKVTVLRI TDVTDEGVPL AVPETWHGEN GPPPQLRVRE IRARKGSALG
VGDRILARTE EAGSGWIAHP MKKLARGEAL MLGILHRDGD RLWLRPVDKR EKRDTLVSDA
GDADAGDLVL AERAGRPPRI TARVTERLGD PFAPRSFSLV AIHKHGIPDV FPETVIEEAG
LVTRLDLGEG REDLRDLPIV AIDPADARDH DDAIWAMPDD DPGNPGGFRA IVAIADVSFY
VRPGSALDRE AKKRGNSVYF PDRVVPMLPE ALSADICSLK HGEDRAAMVC HLTVKANGTL
ANWRFARAVV RIAANIAYED AQAAIDGAPV AGTWDKALAD SALKPLWACW KALASARDAR
EPLDLDLPER RVVLDEKGRI LSVAPRERLD AHRLVEDYMI AANVAAAKAL EAKKAPVMYR
DHEPPSREKL VALKDYLATF DMEFALGQVV RPATFNHILK RITDDAIRPQ IMEQVLRSQT
QAYYAPRNAG HFGLALGSYA HFTSPIRRYA DLLVHRSLVG AYGLETGKPR LEGPGRSGDI
VPRTALTQEE AERMTPIGEL ISQAERRAME AERDTIDRYV AAFLSTKVGE LLDTRITGVQ
PFGFFATVEG LGGDGLVPVS TLGAERFHYD EGAQALEGEE SGDRYTPGMK LRLRLVEANP
INGSLRFELE EGASHLPMRG PRGTRGPKRP MMGRRGRPAN IRHKGGRRR
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