Gene Swit_4041 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_4041 
SymboltruA 
ID5199945 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp4446148 
End bp4446912 
Gene Length765 bp 
Protein Length254 aa 
Translation table11 
GC content73% 
IMG OID640583598 
ProducttRNA pseudouridine synthase A 
Protein accessionYP_001264523 
Protein GI148556941 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0101] Pseudouridylate synthase 
TIGRFAM ID[TIGR00071] pseudouridylate synthase I 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.31208 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.408277 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCGCT TCCGCCTGAC CGTCGAGTTC GACGGGCGCC CCTTCATGGG CTGGCAGCGG 
CAGGCGCACG GCCCCAGCGT CCAGCAGGCG ATCGAGGAGG CGATCACCGC CGTCACCGGC
GAGCGGGCGG TGATCCACGC CGCCGGGCGG ACCGATGCCA GGGTCCATGG CCGGGCGATG
ACCGCGCATG CCGACATCGC CAAGCCGATC ACGCCGTTCC GGCTGAAGGA GGCGCTCAAC
GCGCGGCTGC GCCCCGCGCC GGTCGCGATC CTCGCCTGCG AGCCGGTCGC CGGCGACTGG
CATGCCCGCT TCTCCTGCGT CGGCCGGCGC TACGTCTACC GCATCGTCAA CCGCCGCGCG
CCGCTGACCT TCGACGCCGG CCTCGCCTGG CAGGTCGCGG CCGACCTCGA CGACCAGGCG
ATGCACGCGG CGGCGCAGTG CCTCGTCGGG CGGCACGACT TCACCACCTT CCGTTCGGCG
CATTGCCAGG CGGAAAGCCC GGTCAAGACG CTCGACCGGC TCGACGTGCG CCGTTCGGGC
GAACTGATCG AGATCGAGGC GGCGGCGCGC TCCTTCCTCC ATCACCAGGT CCGCTCGATG
GTCGGCTGCC TCGCGCTGGT CGGCCGGGGC CGCTGGACCG CCGCCGACCT GGCCGACGCG
CTGGCGGCGG CGGACCGCGC CCGGCTCGGC CTCAACGCGC CGCCCGACGG GCTCTATTTC
ATGGAAGCCG TCTATCCGGC GGAAACGGGG GAAACCGCCC GATGA
 
Protein sequence
MTRFRLTVEF DGRPFMGWQR QAHGPSVQQA IEEAITAVTG ERAVIHAAGR TDARVHGRAM 
TAHADIAKPI TPFRLKEALN ARLRPAPVAI LACEPVAGDW HARFSCVGRR YVYRIVNRRA
PLTFDAGLAW QVAADLDDQA MHAAAQCLVG RHDFTTFRSA HCQAESPVKT LDRLDVRRSG
ELIEIEAAAR SFLHHQVRSM VGCLALVGRG RWTAADLADA LAAADRARLG LNAPPDGLYF
MEAVYPAETG ETAR