| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4029 |
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| Symbol | |
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| ID | 5197154 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 4431285 |
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| End bp | 4432814 |
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| Gene Length | 1530 bp |
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| Protein Length | 509 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 640583586 |
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| Product | AMP-dependent synthetase and ligase |
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| Protein accession | YP_001264511 |
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| Protein GI | 148556929 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | [TIGR03098] acyl-CoA ligase (AMP-forming), exosortase system type 1 associated |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.302171 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.718731 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGTGC CTCCCGATCC GACGCCCCGG CCGCTCGATC ATCTCGCGCT GATCGGCGCC
CGCGACGCGC CCGCGCTCGC CGACAAGGCG GGGCTGCTCG ACCATGGCGG GCTCGACGAT
GCGGTCGGCG CGCTGGCAGC GGCGCTGCTC GGCCGGGGCT TGCGGCCCGG CGACCGGGTG
GCGAGCTGGC TGGCCAAGCA GCGGCTCGCC TGCCTGATGC CGCTCGCCGC CGCGCGGGCG
GGGCTGGTCC ATGTCCCGAT CAACCCGCTG CTCAAGCATG GCCAGGTCGC GCATATCCTG
GCCGACAGCG GCGCGCGGCT GCTGATCGCC GGCCGGGGCC GCGCCGACAC GCTCGGGCCC
GGCGACCGGC CCGACGATTG CGCGCTGCTG GTCGAGGAGG ACGAGGGCGC GGCGCTGCTC
GGCCATGGCG ACCGGCTGCC GCCGTCCTCG GCCGATCCCG ACGCGCTGGT CGCGATCCTC
TACACCTCGG GGTCGACCGG GCGGCCCAAG GGGGTGATGC TCAGCCATGC CAATCTCTGG
CTCGGCGCGA TCAGCGTGGC GCATTATCTC GGCCTCGGCG CCGACGACCG GGCACTCGCG
GTGCTACCGC TCAGCTTCGA CTATGGGCAG AACCAGCTCC TCTCGACCTG GGCGGCGGGC
GGCTGCGTCC ACCTGCTCGA CTATCTGACG GCGCGCGACG TGGTGCGCGC GGTCGGCCGG
CACGGCATCA CCACGCTGGC GGGGGTGCCG CCGCTGTGGA TCCAGCTCGC CGAGGCCGCA
TGGCCGGCCG AGAGCGTCGC CCCGCTGCGG CGGCTGACCA ATACCGGCGG GCGGATGAGC
GTGCCGCTGG TCCGGCGGCT GCGCGCCCTG TTCCCGGCGG CGCGGCTCTT CTCGATGTAC
GGGCTGACCG AGGCGTTCCG CTCGACCTAT CTCGATCCGG CGCTGATCGA CGAGCATCCC
GATTCGATCG GCCGCGAGAT TCCGTTCGCC GAGGTGCTGG TCGTCGGCCC CGACGGCGCG
GTCGCGGCCG ACGGCGAGCC CGGCGAACTG GTCCATGCCG GCCCGCTGGT GGCGCAGGGC
TATTGGCGCG ACGCCGATCG GACCGCCCAG CGCTTCCGCC CCGCGCCCGC CGCGTCGCGT
CATGGCGGGA CGGCGGTGTG GTCGGGCGAC ACGGTGGTGC GCGACGCGGC CGGGCTGCTG
CGCTTCGTCG GCCGCGACGA CGAGATGATC AAGAGCGCGG GCAACCGGAT CAGCCCGACC
GAGATCGAGG AGGCGGCGAT CGCCAGCGGC GCGGCGGCCG AGGCGGTCGC GCTGGGCATC
CCCGACGATC GGCTGGGCCA GGCGATCCTG CTCTATGCCC GGCCGGCGAG GGCCGACGCC
GACGCGCGGC TGACCGACTG GTTCCGCCAC AACCTGCCCA ATTTCATGCA GCCCGCGCGG
GTGATCTGGC GCGACGAACT GCCCCGCAAC GCCAATGGCA AGCTCGACCG CACGGCATTG
AAGGCCCAGG CGGCGGAGGA GGCGCGGTGA
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| Protein sequence | MDVPPDPTPR PLDHLALIGA RDAPALADKA GLLDHGGLDD AVGALAAALL GRGLRPGDRV
ASWLAKQRLA CLMPLAAARA GLVHVPINPL LKHGQVAHIL ADSGARLLIA GRGRADTLGP
GDRPDDCALL VEEDEGAALL GHGDRLPPSS ADPDALVAIL YTSGSTGRPK GVMLSHANLW
LGAISVAHYL GLGADDRALA VLPLSFDYGQ NQLLSTWAAG GCVHLLDYLT ARDVVRAVGR
HGITTLAGVP PLWIQLAEAA WPAESVAPLR RLTNTGGRMS VPLVRRLRAL FPAARLFSMY
GLTEAFRSTY LDPALIDEHP DSIGREIPFA EVLVVGPDGA VAADGEPGEL VHAGPLVAQG
YWRDADRTAQ RFRPAPAASR HGGTAVWSGD TVVRDAAGLL RFVGRDDEMI KSAGNRISPT
EIEEAAIASG AAAEAVALGI PDDRLGQAIL LYARPARADA DARLTDWFRH NLPNFMQPAR
VIWRDELPRN ANGKLDRTAL KAQAAEEAR
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