| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4020 |
|---|
| Symbol | |
|---|
| ID | 5198628 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 4422314 |
|---|
| End bp | 4423204 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640583578 |
|---|
| Product | dTDP-4-dehydrorhamnose reductase |
|---|
| Protein accession | YP_001264503 |
|---|
| Protein GI | 148556921 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1091] dTDP-4-dehydrorhamnose reductase |
|---|
| TIGRFAM ID | [TIGR01214] dTDP-4-dehydrorhamnose reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.36894 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCCGCG CGATCCTCGT CACCGGCGGG CAGGGGCAGG TCGGCCTCGA ACTGGCGCGG
CAGGACTGGC CCGTCGATAT GTCTATATAT TATCCGACAC GCGACGAGCT CGACATCGCC
TCGCCGGACA GCATCGCCGC CTATCTGCTC GGCCGCCGCT TCGATGCGAT CGTCAACTGC
GCCGCCTACA CCGCCGTCGA CAAGGCGGAG GAGGAGCGCG ACCTCGCCTT CCGCGTCAAC
GGCGAGGCGC CCGGCCTGCT CGCCGCCACG GGCATCCCGC TGGTCCACGT CTCGACCGAC
TATGTCTTCG ACGGCAGCGG CGACGGCTAT TATCGCGAGG ACGACCCGGT CGCCCCGCTC
GGCGTCTATG GCGCGTCGAA GCTGGCGGGC GAGCGCGCGG TGCTCGCAGG CGGCGCGCGG
GCGGTGGTGC TGCGCACCGC CTGGGTGCTG TCGGCCCACC GCAGCAATTT CCTCAGGACG
ATGCTGCGGG TCGCCGCGAC CAACCCGACG CTGCGCGTCG TCGACGACCA GCGCGGATGC
CCGACCGGGG CGGCCGATAT CGCCGCGACG CTCCGCACCA TCGCGCTGCG GCTGGTCGAG
GACCCCGCCG CGCCGACCGG CGTCTATCAT TTCGTCAATG CCGGCGAGGC GAGCTGGTGC
GAACTGGCGC GCGAGATCTT CGCGCTGAGC GCGGCGGCGG GCGGCCCTTC GGCGGAGGTC
GAGGCGATCA CCACCGCCGA CTATCCGACG CCCGCGAAGC GCCCGGCCAA TTCGAGGCTC
TCGACGGCGA AGATCATCGC GGACTATGCT GTCCGTCCGC GCGACTGGCG GGAGGCCGTC
CGCGACATCG TTGGTGAGCT TGTGGGGCCC GTGCCCCGGA CAGGGGCGTA G
|
|---|
| Protein sequence | MTRAILVTGG QGQVGLELAR QDWPVDMSIY YPTRDELDIA SPDSIAAYLL GRRFDAIVNC
AAYTAVDKAE EERDLAFRVN GEAPGLLAAT GIPLVHVSTD YVFDGSGDGY YREDDPVAPL
GVYGASKLAG ERAVLAGGAR AVVLRTAWVL SAHRSNFLRT MLRVAATNPT LRVVDDQRGC
PTGAADIAAT LRTIALRLVE DPAAPTGVYH FVNAGEASWC ELAREIFALS AAAGGPSAEV
EAITTADYPT PAKRPANSRL STAKIIADYA VRPRDWREAV RDIVGELVGP VPRTGA
|
|---|
| |