| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4010 |
|---|
| Symbol | |
|---|
| ID | 5199716 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 4408984 |
|---|
| End bp | 4411644 |
|---|
| Gene Length | 2661 bp |
|---|
| Protein Length | 886 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640583568 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001264493 |
|---|
| Protein GI | 148556911 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.198206 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACGC AGAAACCCTT CGCCGACGGT CCGGCCGTAG CCGTAGCCGA CCTGCCGCCC
GCCTTCGACG CCGGCTATTA TCTGTCGGCC AATCCCGACC TGGCGATCGC CGCCGATGTG
GCCGCCGACC ATTATGCCGC GACCGGCCGG GCCGAGGGCC GGATCGCCTC GCCGCTGGCG
CTGCGCGAGA ATCTGATCGG GCTGATCGCC GACGGGCGCT CGGTGCTGGA GATCGGGCCG
TTCTGCCGGC CGCTGCTGCG CGGGCCCAAC ATCGCCTATC TCGACGTGCT CGATGCCGCG
CAGTTGCGCG CGCGGGCGGT GGAGGTCGGC GCCGATCCGG CCGGATGCCC CGCGCATATC
GACTATGTCG GCGGGCTCGA GCAGGTACGG CGGCGCTTCG ACGCGGTGAT CAGCAGCCAT
GCGATCGAGC ATCAGCCCGA CCTGATCCAC CATCTCCAGC AGATCGAGCG GATATTGCGG
GCCGACGGCC TGTTCTGCCT GATCGTGCCC GACAAGCGCT ATTGCTTCGA CCATCATATC
GCCGAAAGCA CGATCGCCGA CGTGATCGAG GCGCATCGCG AGCAGCGGCG GCGGCACAGT
CTGGCGAGCG TGATCGAGCA TCACGCGCTG ACCACCCACA ATGATCCGCG CCTCCACTGG
GCCGGGGACC ATGGCCCCGC CGTCCGGGCC GACCGCGTGG CGCAGGTGGA AAAGGCGATG
CGCAGCCATG ACTTCAATCC CGGCCGCTAT ATCGACGTCC ACGCCTGGTA TTTCACGCCC
GACAGCTTCC GCACGACGAT CGAGACGTTG ACGGAACTTG GGCTGATCGG CCTCGAGCTG
GCCGGGGTCT ACGATACTGC GCACGGCCGG AACGAGTTCT GCGCGGTGCT GCGCCTCGGC
GCTGCGGCCC GGGCGCGGGT GCGCGAGGCG CGCGACGAGG GCGGGGTGCT GTTCCTCCAG
ACCGCCGATG CCGAGCATTA TGCGCCGATG CTGGCGATCA CCGCCGCCGG CGTCCGCGAA
TATTGTCGTC GGCACGGCTT CGGCTATGAG AGCTTCCTGG GCGTCAAGCG CGGCTTCCAC
CCCTGGCAGG CGACCTTCAA CCGCATCCCG ATGCTGGAGG AACTGGTCGC ACGGGGCTTC
ACCGGCTGGG CGGTCTATCT CGACGCCGAC GCCTATATCC AGGATCTCGA TTTCGACCTG
ACCGCCTATC TGGCCGACAA GGGGGATCGC GCCGCGATCT TCGCGACCTC GGGGGTGACG
GGCGAGCATT GGGACGTCAA TGCCGGCGTC GCGCTGATCA ACCTCGGCCA TCCGCTCGGC
CGCGAACTGG TCGCGCGATG GAGCGCCGTC TTCGCCGCGC ACAGCGACGA AACGCTGCGA
GGCGCCGTGG AATGGATGGG CGCCGGCAAC GACCAGGATT TGCTGCACAA GATATTGGAG
CGGGACGAGG CGATCGCCCG GGCCGTTCTG GTCGAGCCGA TGAGCCTGCT CAACGGACCG
GACGCCCGTT TCATCCGCCA GCAGTTGCGC ACGCTGGGAC CGACGCTGGA GGCGCGGACG
GACGCCCTGG CGGAGGCGGT GTCGCTCGCC CTGCGTCGCG GCGGAAACAT GCGGTCCGCC
CTCATGACCG ACGCGGATCA GCGCTGGGCG GCGCGCTTCG CGCATCCCGA AGGACGCATT
CCGGAACTGG TCGAGGCGCC GGTGCCCGAT CCGCTGCCGG CGGTCGCGGC CAGGATCGCC
GCGGCGTGGT CGGCCGCGGG GGGAGGCGAT GCGGGATGGC CCGCTTATCA GCAGGCCCTG
GCCGATGGCC TTCGCGCCAA CGACGCCGCG ACGGTGGCGG CGGAACTGGC CGGCCTGGGC
CGGTCGCAGG CCGCGCAGGG CTTTCTCGGC GGCGCGCGCC AGCATGCGCG CGCGCGCGAT
CGCGGCTTCG CCAGGCGGCT GGCGGGCTGG ACCTATGACA AGCTCGTCTC GCTGGCGGAG
GCGGTGGGCG TGCTGCCGCT CGAAAATCCG GAGAATGGCC GCTGGGGCGA GAATGCGCTG
ACCGACCCGG CCGAGCTGTT CGCTGGGGTC GAGGCGGCGC TGGGAGCCGA TCTCGCCCCG
CCGGCCTCGG TCGGCGGCCA TCTCGGCATC GCCGTGGGGC GGGGCATCGT CCTCCACATG
CGGATGCTCG ACGCGATCCA CGCGGCCTGG CGGCTCCGCC AGCTCGCCGA CACGGCCGGC
CTGGGCAATG ATGCGCGAAT CGCCGAGATC GACGGCGGGG CCGGGCTGAC GGCCTATTAT
GCGCTGCGCC TGGGCCTGAC CCGATACCGG CTGTTCGACA CGCCGACGAT GAACGCGATC
CAGGCCTATC TGCTCGCCGG GGCAGGGCCG TTGCAGCCGG AGCCGCTCGT CGCCTTCGCC
GCGCAGCCGC CGGGATCGAT CGACATCCTG TTCAACGCCG ACACGCTGCC GGGAATGGAG
CAGGCGGCGG CGGTCGCCCA TCTCCGCGAC GCGGCGCGGA TCGGCATCCG GCACGTCTTC
AGCATCAACC ACGAGGCGGC CGCGCCCGGC CAGGCCCCCG TATCCGACCT GCTCCGCGAG
GCCGGCGGCT ATCGCCTCGC CGCCCGCCAC CGCCACTGGC TGCGGGCGGG CTATGTCGAG
GAGCATTATC TGCTGGTCTG A
|
|---|
| Protein sequence | MATQKPFADG PAVAVADLPP AFDAGYYLSA NPDLAIAADV AADHYAATGR AEGRIASPLA
LRENLIGLIA DGRSVLEIGP FCRPLLRGPN IAYLDVLDAA QLRARAVEVG ADPAGCPAHI
DYVGGLEQVR RRFDAVISSH AIEHQPDLIH HLQQIERILR ADGLFCLIVP DKRYCFDHHI
AESTIADVIE AHREQRRRHS LASVIEHHAL TTHNDPRLHW AGDHGPAVRA DRVAQVEKAM
RSHDFNPGRY IDVHAWYFTP DSFRTTIETL TELGLIGLEL AGVYDTAHGR NEFCAVLRLG
AAARARVREA RDEGGVLFLQ TADAEHYAPM LAITAAGVRE YCRRHGFGYE SFLGVKRGFH
PWQATFNRIP MLEELVARGF TGWAVYLDAD AYIQDLDFDL TAYLADKGDR AAIFATSGVT
GEHWDVNAGV ALINLGHPLG RELVARWSAV FAAHSDETLR GAVEWMGAGN DQDLLHKILE
RDEAIARAVL VEPMSLLNGP DARFIRQQLR TLGPTLEART DALAEAVSLA LRRGGNMRSA
LMTDADQRWA ARFAHPEGRI PELVEAPVPD PLPAVAARIA AAWSAAGGGD AGWPAYQQAL
ADGLRANDAA TVAAELAGLG RSQAAQGFLG GARQHARARD RGFARRLAGW TYDKLVSLAE
AVGVLPLENP ENGRWGENAL TDPAELFAGV EAALGADLAP PASVGGHLGI AVGRGIVLHM
RMLDAIHAAW RLRQLADTAG LGNDARIAEI DGGAGLTAYY ALRLGLTRYR LFDTPTMNAI
QAYLLAGAGP LQPEPLVAFA AQPPGSIDIL FNADTLPGME QAAAVAHLRD AARIGIRHVF
SINHEAAAPG QAPVSDLLRE AGGYRLAARH RHWLRAGYVE EHYLLV
|
|---|
| |