| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4009 |
|---|
| Symbol | |
|---|
| ID | 5199715 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 4404775 |
|---|
| End bp | 4408935 |
|---|
| Gene Length | 4161 bp |
|---|
| Protein Length | 1386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640583567 |
|---|
| Product | glycosyl transferase, group 1 |
|---|
| Protein accession | YP_001264492 |
|---|
| Protein GI | 148556910 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG0438] Glycosyltransferase
[COG1216] Predicted glycosyltransferases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGGGG GATTTCTACG GAGGCGCGCG GCCCGGCGCG CATTTGTGCA AGCTGGCGTC
GAGCGTGACG GCGGGCGATG GGCGGGTGCC GCCGTCCATT ATCGCCGCTA TCTCCGCTAC
CGTCCCGACG ATTTCGCGAT CTGGGTGCAG CTTGGCCACA TGTTGGGCGA GAGCGGCGAT
CCGGCGGGGG CCGACCAGGC CTATCGAACC GCGCATGCGC TGAACCCGGA CGATGCCGAC
CTCGCCCTGT GCCGCGGGCA CCTCGCCCGG CGCGGCGGCG ATGTCGAGGC GGCGATCGTC
TTCTACCGCC GCAGCTTCGA GATCGACGGC AATGAGCGCG CGGTGAACAT GCTGGCGGAG
CTCGATGCCG AGACCGGCGG CGAGTCGGAG ACCGAACAGG CGCCGGTCCA TGGCGGGCGG
CTCGACGGCT GGTTCGAGCG ATCGGTCTCC GGCGTCCTGT CGGAGGACGG CGTCGACGAT
CCCTGGGTCG TGTTCCGCGC CGGCGACCGG CTGGTGGGAC AGGCGCGGCC GGGCCGCAAC
GACGACGGCG CGCTCGAATT CCGCGCCACG CTCGATGTCG AGCTGGGCGA GAATGGCGAG
GGGGTCGAGG TGATCGCCCG GCGCATGCCC GACGGCGCCA TGCTCGAACC CGGCCCGTTC
TTCCTGTTCC CGCCGTCGCG CCACCCGGCC GACCATGCGG CCGCTTGGTC GGTCCCGGCC
GAGATCGTCA AGCCCTACGA CCTGCCGGCT GGGCGCGAGG TCGCGCTGTT CGTGACCCAT
TCGCGTTCGG GCAAGATCAA GCCCAACGTC CTGCCCTATG TTCGCGCGCT CAGGCAGGCG
GGGCTCGCCG TCTTCCTGGT CGCGACCGTC GACCGGCCCG TCGACCTGCC GGCCGAGCTG
CTCGACAGCG TCGACGCGGC GATGGTCCGC CGCAATGCGG GCTACGACTT CGCCGCCTGG
GCGCATGCGC TGAAGCTCCA TCCCCGGCTG TACGGGGCCG CGACCCTCTA TCTCGTCAAC
GACAGCGTAG TGCCGGCGGC CGACGACGCG CGGATCGCCG CGATTGTCGA CCGGGTCCGC
CGCAGCGGCG CCGACCTGAT CGGGCTGACC GAGAGCCACG AGTGGCGCTG GCACGTCCAG
AGCTATTTCC TGGCGATCAA GCCGGGCCTG CTCGCGTCGC GCTCGTTCCA CGGCTTCATG
GACGACGTCC GGCTGCTGAC CCGCAAGGAT CACGTCATCC GCGCCTATGA GGTGCGGCTG
GCCGAGATCG CCGAGGAGGC CGGGCGCTCG GTCGAGATCC TCTTCCCCAG CGCGACCGCG
ATCAACCCGA CGCTGTTCGG ATGGCGCGGG CTGCTCGGGC AGGGCATGCC CTTCGTCAAG
GTGCTGCTGC TGCGCGGCAC CTTCGACGCG ATCGACACCG ACGGCTGGCG CGACGTGCTC
GCCGGTGCGG GCTTCGACGT CGCGCTCGCC GAGGCGACGG TCGCGGCGGG GGCGGAGGAG
GGACCGGTCG ACGATGGCGG CCGGCTGCTG GCCCGTCGCA TGCCGGCCGG GCTGCGCGCC
GACCGGCCGC TCAAGGTCGC CTTCTTCGGG CCCTGGAACT ACGACAACGG CCTCGGCCAT
GCCAGCCGCG GGATCATCGC GGCGATCCGG CGCACCGGCG TCCTGCTCAA CCTCCATCCG
GTCAAGCGGC CCTTCCATAT CCACAAGCCG CTGGTCCCGC CCACCGACAT CCTCGACTTC
GAAGGTCCGG CCGACGTCGC GATCGTCCAT CTCAATCCCG ACAGCTGGCA CCTGCTGACC
GACGACCAGC GCGAGACGAT CGCCCGGGCG AAGCGTCGCA TCGGCTATTG GGTCTGGGAG
ATGGGCCATA TCCCGCCGGC CTGGCGCCGC AACTTCGGCG CGGTCGACCG GATCTGGGCG
CCGAGCCGCT ATTGCGCCGA GCTGTTCGCC GCGCAGGGCG GCGTGCCGGT CGACGTGGTC
CCGCACGCCG TGCCGGTGGG CGAGCCGGCG ACGGTCGACC GGGCCGGTGC GCTCGCCCGG
CTCGGCCTGC CCGCCGATCG CCGGGTCATC CTCTATGTGT TCGACGGGTC GAGCTATCTG
GTCCGCAAGA ACCCGGCCGC GCTGGTCCGC GCCTTCTCGG CCTCCGGCCT CGCCGCGCGC
GGCTGGTCGC TGCTGCTCAA GACCAAGCAT CTCCAGGACC GGCCCGAGGA AGGCGAGGCG
TTCCGCGCCC TCGCCGAGGG GACCGAGGGC GTGGTGCTGG TTGACCGGGC GATGGCGGCG
GAGGAACTGG CCGAGCTGAC GGCGCTCGCC GATCTCTACG CCTCGCCGCA TTGCTCCGAG
GGGTTCGGCC TGACGATCGC CGAGGCGATG GCGGCGGGCA AGCCGGTGGT CGCGACCGAC
TTCGGCGGCA GTCGCGACTT CCTCGACGCA TCGGTCGGCT GGCCGGTCAA GGCGCATCCC
TGGCGGCTCG AGCAGGATTT CGGCCATTAT ACCGAAGGCG GCGACTGGGC GCGGATCGAC
GAGCCGGCGC TCGCCGCCAC GCTGGCGTGC GCGGCCGACG CGATCGAGGC TGGCGGCGAC
GGCAAGGGCA AGGCCGCCCG CGACCGGATC GCCGCGCAAC TCTCCTACGA CGCGGTGGCC
GAACGGGTCG CGGCCAGCCT CGCGGCGCTG CGCGAGATGC CGGTGGGCGG CGGTGGCGTC
CATGTCGAGC CCAATCTCCT GGCCGGCATG CCGGTCGAGC AGGCGATCCT CGGCCCGGGG
CTGAGCCTTG TCGCCCTGGC CCCCGACGGC GCGCTCGATA CGCCGCTGCC CGAGGACCTG
CCGACCGACC GCGCCGCGTG GGTCATCCTC GCCCCGCGCG GCGCTATCCT CGCGCCGATG
ATCGAGCGCG ACTGGCGCCA GGCGGCCGAG GCCCGTCCCG ATGTCGGCAT CTTCTACGGC
GACGATTTCG CGGCAGGGGC CGAGCGCGGG ATCGACCAGC TCCGGCTGAA GCCGGCCTTC
GACCTGACCC TGCTCGCCGC GCAGGACTAT ATCGGCGCGC CGCTGATCGT CCGCGCCTCG
GTGCTTGCCG ACCTCGGTCT GCGCGCGGGG ATGGGCACGG CGCTGCTCGA CGATCTGCTG
CTGCGCGCGT ACCATGCCGG CGTCTCGATC GAGCGGATCG CCAGGGTGCT GCTGCTCCAT
CCGGGGCCGC GCCCGCAGGC CGACCCGGTG GTGCGACAGG CGATGCTCGC GGCGCAGCCG
CGCTTCGCCC ACCATCGCTT CCGCCCCGGC CGCGCGCCGG GCACGCTGGC GCAGGAACGG
CGGTTCGGCC GCGATCATCC GCCGGTGTCG CTGCTCATCC CGACCCGGCG GAGCAAGCTG
CCCGGCGGGC GCACCGCCTA TGTCGAGCGG CTGCTCAAGG CGCTCGTCGC CACCGACTGG
CCGATGGACC GGCTGACCGT GATCGTCGGC GACGACGTCG CGGGCGAGCC GGCCTGGGCG
AAGCGCGCCT GGCCCTTCGC GCTGCGCCGG ATCGAGACGC CGCGCCGCGA CGATGAGCCG
TTCAACTATG CCGCGAAGAT GAACCGGCTG TGGCGCGCCG CCGGGAGCGA GCAGATCGTG
ATGATGAACG ACGATCTGCT TCCCACCGAA CCCGGCTGGC TGAGGGCGCT GATCGGCTTC
ACGATGGACG AGGGCGTCGG CGGCGCCGGC GGGCGCCTGC TCTATGAGGA CGGCCGGCTC
CAGCATGCCG GCATTGGCCC GCTGTTCGGC GCGATCGCCC ATGTCTGGGC GGGCCGGGAG
ACGGTCGCGG GCAGCTATCA GGACTGGGCG CTGGTCCAGC GCGAATGGTC GGCGGTGACG
GGCGCGCTGT TCGCGACGCG GCGCTCGCTG ATGGAGGAGG TCGGCGGCTT CGACGAGCAG
TTCACGCTCG AATATAACGA CATCGACCTC TGCCTGCGGC TGCGGGCGCT GGGCTATCGG
ATCGTCTGCA CGCCGGAGGC GGAGATGGTC CATGCCGAGC GCGCCTCGCG CGGCGACATG
CCCGCGGGCG GGGACCAATA TGCCGCCTTC CACCAACGCT GGAAGCACTG GCTCGACGAC
GATCCCTCCT GGCATCCCGG CCTCAGCCGC GACAGTTTCG AGCTGATGCC GATCGACGAT
CCCCGCGCCT GGTATCGGTG A
|
|---|
| Protein sequence | MTGGFLRRRA ARRAFVQAGV ERDGGRWAGA AVHYRRYLRY RPDDFAIWVQ LGHMLGESGD
PAGADQAYRT AHALNPDDAD LALCRGHLAR RGGDVEAAIV FYRRSFEIDG NERAVNMLAE
LDAETGGESE TEQAPVHGGR LDGWFERSVS GVLSEDGVDD PWVVFRAGDR LVGQARPGRN
DDGALEFRAT LDVELGENGE GVEVIARRMP DGAMLEPGPF FLFPPSRHPA DHAAAWSVPA
EIVKPYDLPA GREVALFVTH SRSGKIKPNV LPYVRALRQA GLAVFLVATV DRPVDLPAEL
LDSVDAAMVR RNAGYDFAAW AHALKLHPRL YGAATLYLVN DSVVPAADDA RIAAIVDRVR
RSGADLIGLT ESHEWRWHVQ SYFLAIKPGL LASRSFHGFM DDVRLLTRKD HVIRAYEVRL
AEIAEEAGRS VEILFPSATA INPTLFGWRG LLGQGMPFVK VLLLRGTFDA IDTDGWRDVL
AGAGFDVALA EATVAAGAEE GPVDDGGRLL ARRMPAGLRA DRPLKVAFFG PWNYDNGLGH
ASRGIIAAIR RTGVLLNLHP VKRPFHIHKP LVPPTDILDF EGPADVAIVH LNPDSWHLLT
DDQRETIARA KRRIGYWVWE MGHIPPAWRR NFGAVDRIWA PSRYCAELFA AQGGVPVDVV
PHAVPVGEPA TVDRAGALAR LGLPADRRVI LYVFDGSSYL VRKNPAALVR AFSASGLAAR
GWSLLLKTKH LQDRPEEGEA FRALAEGTEG VVLVDRAMAA EELAELTALA DLYASPHCSE
GFGLTIAEAM AAGKPVVATD FGGSRDFLDA SVGWPVKAHP WRLEQDFGHY TEGGDWARID
EPALAATLAC AADAIEAGGD GKGKAARDRI AAQLSYDAVA ERVAASLAAL REMPVGGGGV
HVEPNLLAGM PVEQAILGPG LSLVALAPDG ALDTPLPEDL PTDRAAWVIL APRGAILAPM
IERDWRQAAE ARPDVGIFYG DDFAAGAERG IDQLRLKPAF DLTLLAAQDY IGAPLIVRAS
VLADLGLRAG MGTALLDDLL LRAYHAGVSI ERIARVLLLH PGPRPQADPV VRQAMLAAQP
RFAHHRFRPG RAPGTLAQER RFGRDHPPVS LLIPTRRSKL PGGRTAYVER LLKALVATDW
PMDRLTVIVG DDVAGEPAWA KRAWPFALRR IETPRRDDEP FNYAAKMNRL WRAAGSEQIV
MMNDDLLPTE PGWLRALIGF TMDEGVGGAG GRLLYEDGRL QHAGIGPLFG AIAHVWAGRE
TVAGSYQDWA LVQREWSAVT GALFATRRSL MEEVGGFDEQ FTLEYNDIDL CLRLRALGYR
IVCTPEAEMV HAERASRGDM PAGGDQYAAF HQRWKHWLDD DPSWHPGLSR DSFELMPIDD
PRAWYR
|
|---|
| |